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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31092-RA through 18771 annotations produced 1 hits



a2M-receptor-like (LpR2):

Annotation Number : CG31092
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051092
Gbrowse : chr3R:21524487-21566187 (-) // 100.0 //
Probeset : 1628032_a_at
Accessions : protein= NP_001097926; /// NP_001097927; /// NP_001097928; /// NP_001097929; /// NP_001097930; /// NP_733118; /// NP_788742;, nucleotide= NM_001104456; /// NM_001104457; /// NM_001104458; /// NM_001104459; /// NM_001104460; /// NM_170239; /// NM_176565;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005041 // low-density lipoprotein receptor activity // inferred from sequence or structural similarity /// 0005509 // c
FlyMine data for FBgn0051092.
BDGP gene expression has embryonic in situ data for CG31092: 16 pix of staining in 7 body parts.
Homophila reports that CG31092 is a close match (1e-11) to human gene DHRD;EFEMP1;FBNL (NP_004096), a gene associated with Doyne honeycomb degeneration of retina, 126600 (3).
TRiP has 1 RNAi stocks for FBgn0051092 available for purchase.
VDRC has 2 RNAi stocks for FBgn0051092 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain264 224 of 4 1.10None
Head129 94 of 4 0.50Down
Eye31 34 of 4 0.13Down
Thoracicoabdominal ganglion266 84 of 4 1.10None
Salivary gland13 21 of 4 0.06Down
Crop45 64 of 4 0.20Down
Midgut77 64 of 4 0.30Down
Tubule24 44 of 4 0.10Down
Hindgut328 234 of 4 1.40None
Heart503 484 of 4 2.08Up
Fat body2460 1254 of 410.18Up
Ovary56 04 of 4 0.20Down
Testis14 14 of 4 0.10Down
Male accessory glands19 24 of 4 0.10Down
Virgin spermatheca1975 624 of 4 8.17Up
Mated spermatheca2253 2624 of 4 9.32Up
Adult carcass676 704 of 4 2.80Up
Larval CNS145 304 of 4 0.60Down
Larval Salivary gland47 34 of 4 0.20Down
Larval midgut90 104 of 4 0.37Down
Larval tubule11 24 of 4 0.00Down
Larval hindgut114 64 of 4 0.47Down
Larval fat body11 22 of 4 0.00Down
Larval trachea36 64 of 4 0.15Down
Larval carcass83 104 of 4 0.35Down
S2 cells (growing)69 134 of 4 0.29Down
Whole fly241 294 of 4

Looking for CG31092-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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