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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31100-RA through 18771 annotations produced 1 hits



(CG31100):

Annotation Number : CG31100
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051100
Gbrowse : chr3R:4820949-4827608 (-) // 100.0 //
Probeset : 1635416_at
Accessions : protein= NP_731299;, nucleotide= NM_169249;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0015145 // monosaccharide transmembrane trans
FlyMine data for FBgn0051100.
BDGP gene expression has embryonic in situ data for CG31100: 10 pix of staining in 8 body parts.
Homophila reports that CG31100 is a close match (7e-12) to human gene GLUT2;SLC2A2 (NP_000331), a gene associated with Fanconi-Bickel syndrome, 227810 (3);{Diabetes mellitus, noninsulin-dependent} (3).
VDRC has 2 RNAi stocks for FBgn0051100 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain71 ± 34 of 4 2.90Up
Head113 ± 64 of 4 4.60Up
Eye51 ± 44 of 4 2.12Up
Thoracicoabdominal ganglion188 ± 44 of 4 7.70Up
Salivary gland220 ± 54 of 4 8.99Up
Crop25 ± 14 of 4 1.00None
Midgut5 ± 20 of 4 0.20Down
Tubule9 ± 12 of 4 0.40Down
Hindgut454 ± 124 of 418.50Up
Heart4 ± 00 of 4 0.18Down
Fat body7 ± 61 of 4 0.30Down
Ovary3 ± 11 of 4 0.20Down
Testis78 ± 44 of 4 3.20Up
Male accessory glands235 ± 174 of 4 9.60Up
Virgin spermatheca277 ± 254 of 411.31Up
Mated spermatheca397 ± 524 of 416.21Up
Adult carcass57 ± 94 of 4 2.30Up
Larval CNS4 ± 12 of 4 0.17Down
Larval Salivary gland61 ± 94 of 4 2.51Up
Larval midgut8 ± 22 of 4 0.35Down
Larval tubule373 ± 574 of 415.20Up
Larval hindgut1689 ± 194 of 468.88Up
Larval fat body1866 ± 1984 of 476.10Up
Larval trachea89 ± 234 of 4 3.66Up
Larval carcass119 ± 134 of 4 4.89Up
S2 cells (growing)5 ± 00 of 4 0.23Down
Whole fly24 ± 14 of 4

Looking for CG31100-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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