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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG31102-RA through 18771 annotations produced 1 hits


Annotation Number : CG31102
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051102
Gbrowse : chr3R:21119179-21121312 (-) // 100.0 //
Probeset : 1624395_at
Accessions : protein= NP_733092;, nucleotide= NM_170213;
FlyMine data for FBgn0051102.
BioGrid reports that CG31102 interacts with CG6337 .
VDRC has 2 RNAi stocks for FBgn0051102 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain35 24 of 4 0.50Down
Head128 44 of 4 1.80Up
Eye71 64 of 4 0.99None
Thoracicoabdominal ganglion29 24 of 4 0.40Down
Salivary gland167 114 of 4 2.33Up
Crop60 44 of 4 0.80None
Midgut353 234 of 4 4.90Up
Tubule1030 1144 of 414.40Up
Hindgut222 114 of 4 3.10Up
Heart100 84 of 4 1.39Up
Fat body171 214 of 4 2.39Up
Ovary4 00 of 4 0.10Down
Testis22 24 of 4 0.30Down
Male accessory glands19 24 of 4 0.30Down
Virgin spermatheca185 44 of 4 2.58Up
Mated spermatheca224 64 of 4 3.13Up
Adult carcass139 24 of 4 1.90Up
Larval CNS7 23 of 4 0.10Down
Larval Salivary gland131 84 of 4 1.84Up
Larval midgut218 144 of 4 3.04Up
Larval tubule760 314 of 410.60Up
Larval hindgut190 134 of 4 2.66Up
Larval fat body232 194 of 4 3.20Up
Larval trachea179 424 of 4 2.51Up
Larval carcass213 444 of 4 2.97Up
S2 cells (growing)5 01 of 4 0.08Down
Whole fly71 54 of 4

Looking for CG31102-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime