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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31103-RA through 18771 annotations produced 1 hits



(CG31103):

Annotation Number : CG31103
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051103
Gbrowse : chr3R:21045042-21046482 (+) // 100.0 //
Probeset : 1638583_at
Accessions : protein= NP_001097914;, nucleotide= NM_001104444;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation
FlyMine data for FBgn0051103.
TRiP has 1 RNAi stocks for FBgn0051103 available for purchase.
VDRC has 2 RNAi stocks for FBgn0051103 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 04 of 4 0.20Down
Head255 334 of 4 7.90Up
Eye372 124 of 411.51Up
Thoracicoabdominal ganglion5 11 of 4 0.20Down
Salivary gland14 11 of 4 0.44Down
Crop71 54 of 4 2.20Up
Midgut7 22 of 4 0.20Down
Tubule24 14 of 4 0.70Down
Hindgut40 04 of 4 1.20None
Heart6 12 of 4 0.21Down
Fat body8 23 of 4 0.25Down
Ovary4 02 of 4 0.10Down
Testis5 01 of 4 0.20Down
Male accessory glands8 22 of 4 0.20Down
Virgin spermatheca5 11 of 4 0.17Down
Mated spermatheca5 03 of 4 0.16Down
Adult carcass203 144 of 4 6.30Up
Larval CNS2 12 of 4 0.09Down
Larval Salivary gland7 20 of 4 0.22Down
Larval midgut7 10 of 4 0.22Down
Larval tubule10 14 of 4 0.30Down
Larval hindgut122 164 of 4 3.78Up
Larval fat body5 20 of 4 0.20Down
Larval trachea573 484 of 417.73Up
Larval carcass243 114 of 4 7.52Up
S2 cells (growing)4 02 of 4 0.13Down
Whole fly32 44 of 4

Looking for CG31103-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime