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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31119-RA through 18771 annotations produced 1 hits



CG31119 (HdacX):

Annotation Number : CG31119
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051119
Gbrowse : chr3R:20680822-20681914 (-) // 100.0 //
Probeset : 1638048_at
Accessions : protein= NP_733048;, nucleotide= NM_170173;
Pathway : 0000118 // histone deacetylase complex // inferred from sequence or structural similarity
Interpro : 0004407 // histone deacetylase activity // inferred from sequence or structural similarity /// 0016787 // hydrolase acti
FlyMine data for FBgn0051119.
TRiP has 1 RNAi stocks for FBgn0051119 available for purchase.
VDRC has 1 RNAi stocks for FBgn0051119 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain123 ± 84 of 4 7.40Up
Head53 ± 34 of 4 3.20Up
Eye93 ± 54 of 4 5.61Up
Thoracicoabdominal ganglion125 ± 94 of 4 7.50Up
Salivary gland47 ± 84 of 4 2.88Up
Crop24 ± 24 of 4 1.50Up
Midgut21 ± 14 of 4 1.30None
Tubule22 ± 43 of 4 1.30None
Hindgut57 ± 34 of 4 3.40Up
Heart37 ± 44 of 4 2.25Up
Fat body14 ± 14 of 4 0.85None
Ovary9 ± 12 of 4 0.60Down
Testis11 ± 14 of 4 0.70Down
Male accessory glands52 ± 54 of 4 3.20Up
Virgin spermatheca7 ± 12 of 4 0.43Down
Mated spermatheca15 ± 23 of 4 0.91None
Adult carcass21 ± 34 of 4 1.30None
Larval CNS13 ± 64 of 4 0.79None
Larval Salivary gland2 ± 00 of 4 0.15Down
Larval midgut8 ± 10 of 4 0.52Down
Larval tubule5 ± 11 of 4 0.30Down
Larval hindgut6 ± 01 of 4 0.38Down
Larval fat body8 ± 00 of 4 0.50Down
Larval trachea4 ± 20 of 4 0.26Down
Larval carcass3 ± 10 of 4 0.24Down
S2 cells (growing)4 ± 01 of 4 0.28Down
Whole fly16 ± 14 of 4

Looking for CG31119-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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