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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31121-RA through 18771 annotations produced 1 hits



(CG31121):

Annotation Number : CG31121
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051121
Gbrowse : chr3R:20707179-20720327 (-) // 100.0 //
Probeset : 1632118_s_at
Accessions : protein= NP_733058; /// NP_733059;, nucleotide= NM_170179; /// NM_170180;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0043190 // ATP-binding cassette (ABC) transporter complex
Interpro : "0005215 // transporter activity // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferr
FlyMine data for FBgn0051121.
BDGP gene expression has embryonic in situ data for CG31121: 29 pix of staining in 15 body parts.
Homophila reports that CG31121 is a close match (4e-27) to human gene ABCG5 (NP_071881), a gene associated with Sitosterolemia, 210250 (3).
BioGrid reports that CG31121 interacts with CG4276 CG5522 CG8542 CG6253 .
VDRC has 2 RNAi stocks for FBgn0051121 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.20Down
Head24 ± 14 of 4 1.80Up
Eye24 ± 34 of 4 1.74None
Thoracicoabdominal ganglion0 ± 00 of 4 0.10Down
Salivary gland3 ± 00 of 4 0.21Down
Crop119 ± 54 of 4 8.50Up
Midgut2 ± 10 of 4 0.20Down
Tubule3 ± 00 of 4 0.30Down
Hindgut67 ± 34 of 4 4.80Up
Heart5 ± 10 of 4 0.38Down
Fat body6 ± 20 of 4 0.49Down
Ovary11 ± 13 of 4 0.80None
Testis2 ± 00 of 4 0.20Down
Male accessory glands128 ± 64 of 4 9.20Up
Virgin spermatheca6 ± 21 of 4 0.47None
Mated spermatheca6 ± 21 of 4 0.44None
Adult carcass25 ± 33 of 4 1.80Up
Larval CNS3 ± 11 of 4 0.24Down
Larval Salivary gland9 ± 10 of 4 0.71None
Larval midgut5 ± 20 of 4 0.39Down
Larval tubule2 ± 00 of 4 0.20Down
Larval hindgut108 ± 104 of 4 7.75Up
Larval fat body14 ± 20 of 4 1.00None
Larval trachea278 ± 204 of 419.98Up
Larval carcass152 ± 164 of 410.95Up
S2 cells (growing)0 ± 00 of 4 0.05Down
Whole fly14 ± 03 of 4

Looking for CG31121-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime