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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31125-RA through 18771 annotations produced 1 hits



(CG31125):

Annotation Number : CG31125
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051125
Gbrowse : chr3R:20479092-20480543 (-) // 99.73 //
Probeset : 1641314_at
Accessions : protein= NP_733025;, nucleotide= NM_170161;
FlyMine data for FBgn0051125.
BDGP gene expression has embryonic in situ data for CG31125: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0051125 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain102 ± 84 of 411.10Up
Head26 ± 43 of 4 2.90Up
Eye13 ± 13 of 4 1.41None
Thoracicoabdominal ganglion113 ± 24 of 412.20Up
Salivary gland6 ± 10 of 4 0.68None
Crop2 ± 10 of 4 0.30None
Midgut3 ± 10 of 4 0.40None
Tubule5 ± 10 of 4 0.60Down
Hindgut3 ± 10 of 4 0.40None
Heart2 ± 00 of 4 0.30None
Fat body4 ± 30 of 4 0.46None
Ovary6 ± 20 of 4 0.70None
Testis47 ± 44 of 4 5.20Up
Male accessory glands5 ± 40 of 4 0.60None
Virgin spermatheca2 ± 00 of 4 0.24None
Mated spermatheca2 ± 00 of 4 0.30None
Adult carcass1 ± 00 of 4 0.20None
Larval CNS145 ± 44 of 415.64Up
Larval Salivary gland9 ± 20 of 4 1.05None
Larval midgut5 ± 00 of 4 0.55None
Larval tubule2 ± 00 of 4 0.20None
Larval hindgut7 ± 00 of 4 0.81None
Larval fat body14 ± 10 of 4 1.60None
Larval trachea17 ± 21 of 4 1.88None
Larval carcass13 ± 30 of 4 1.44None
S2 cells (growing)20 ± 10 of 4 2.26Up
Whole fly9 ± 20 of 4

Looking for CG31125-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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