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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31133-RA through 18771 annotations produced 1 hits



(CG31133):

Annotation Number : CG31133
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051133
Gbrowse : chr3R:19973156-19974645 (-) // 100.0 //
Probeset : 1635895_at
Accessions : protein= NP_732958;, nucleotide= NM_170125;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004812 // aminoacyl-tRNA ligase activity // in
FlyMine data for FBgn0051133.
BDGP gene expression has embryonic in situ data for CG31133: 36 pix of staining in 8 body parts.
BioGrid reports that CG31133 interacts with CG4313 CG9665 .
VDRC has 3 RNAi stocks for FBgn0051133 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain29 ± 14 of 4 0.90None
Head28 ± 14 of 4 0.80None
Eye24 ± 24 of 4 0.73None
Thoracicoabdominal ganglion38 ± 24 of 4 1.10None
Salivary gland37 ± 44 of 4 1.11None
Crop29 ± 34 of 4 0.90None
Midgut46 ± 34 of 4 1.40Up
Tubule54 ± 24 of 4 1.60Up
Hindgut36 ± 04 of 4 1.10None
Heart29 ± 24 of 4 0.86None
Fat body43 ± 14 of 4 1.28Up
Ovary69 ± 24 of 4 2.00Up
Testis10 ± 14 of 4 0.30Down
Male accessory glands32 ± 24 of 4 1.00None
Virgin spermatheca40 ± 24 of 4 1.18None
Mated spermatheca42 ± 34 of 4 1.24None
Adult carcass28 ± 54 of 4 0.80None
Larval CNS52 ± 44 of 4 1.53Up
Larval Salivary gland46 ± 24 of 4 1.37Up
Larval midgut60 ± 64 of 4 1.77Up
Larval tubule58 ± 14 of 4 1.70Up
Larval hindgut54 ± 04 of 4 1.61Up
Larval fat body44 ± 34 of 4 1.30None
Larval trachea36 ± 64 of 4 1.07None
Larval carcass36 ± 24 of 4 1.07None
S2 cells (growing)56 ± 24 of 4 1.66Up
Whole fly34 ± 24 of 4

Looking for CG31133-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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