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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31137-RA through 18771 annotations produced 1 hits



twin (twin):

Annotation Number : CG31137
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011725
Gbrowse : chr3R:20023310-20047687 (-) // 100.0 //
Probeset : 1624627_s_at
Accessions : protein= NP_732964; /// NP_732965; /// NP_732966; /// NP_732967; /// NP_732968; /// NP_788732;, nucleotide= NM_170128; /// NM_170129; /// NM_170130; /// NM_170131; /// NM_170132; /// NM_176555;
Pathway : deadenylation-dependent decay // inferred from sequence or structural similarity /// 0000289 // nuclear-transcribed mRN
Interpro : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from sequence or structural simi
FlyMine data for FBgn0011725.
TRiP has 2 RNAi stocks for FBgn0011725 available for purchase.
VDRC has 3 RNAi stocks for FBgn0011725 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain328 ± 124 of 4 0.60Down
Head127 ± 84 of 4 0.20Down
Eye122 ± 114 of 4 0.22Down
Thoracicoabdominal ganglion245 ± 194 of 4 0.40Down
Salivary gland169 ± 94 of 4 0.30Down
Crop229 ± 64 of 4 0.40Down
Midgut101 ± 14 of 4 0.20Down
Tubule115 ± 34 of 4 0.20Down
Hindgut135 ± 14 of 4 0.20Down
Heart142 ± 74 of 4 0.25Down
Fat body166 ± 294 of 4 0.29Down
Ovary865 ± 64 of 4 1.50Up
Testis1640 ± 434 of 4 2.90Up
Male accessory glands198 ± 84 of 4 0.40Down
Virgin spermatheca141 ± 74 of 4 0.25Down
Mated spermatheca140 ± 84 of 4 0.25Down
Adult carcass138 ± 184 of 4 0.20Down
Larval CNS336 ± 184 of 4 0.59Down
Larval Salivary gland308 ± 84 of 4 0.54Down
Larval midgut120 ± 64 of 4 0.21Down
Larval tubule199 ± 44 of 4 0.40Down
Larval hindgut168 ± 44 of 4 0.30Down
Larval fat body417 ± 1354 of 4 0.70None
Larval trachea212 ± 134 of 4 0.38Down
Larval carcass161 ± 84 of 4 0.28Down
S2 cells (growing)194 ± 34 of 4 0.34Down
Whole fly565 ± 434 of 4

Looking for CG31137-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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