FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG3114-RA through 18771 annotations produced 1 hits

erect wing (ewg):

Annotation Number : CG3114
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005427
Gbrowse : chrX:162553-170410 (-) // 100.0 //
Probeset : 1629064_at
Accessions : protein= NP_001014707; /// NP_001014708; /// NP_001014709; /// NP_001014710; /// NP_001014711; /// NP_001014712; /// NP_476892; /// NP_726660;, nucleotide= NM_001014707; /// NM_001014708; /// NM_001014709; /// NM_001014710; /// NM_001014711; /// NM_001014712; /// NM_057544; /// NM_166836;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // non-traceable au
FlyMine data for FBgn0005427.
BioGrid reports that CG3114 interacts with CG3371 CG6741 CG9463 CG3162 CG3193 CG31973 CG32062 CG32068 CG32346 CG32793 CG3758 CG4035 CG40452 CG33526 CG4193 CG4550 CG4617 CG4788 CG4865 CG5140 CG5175 CG5272 CG5433 CG5814 CG6073 CG6155 CG6340 CG6359 CG6779 CG6988 CG7037 CG7583 CG7803 CG7808 CG8280 CG8986 CG8085 CG8581 .
TRiP has 2 RNAi stocks for FBgn0005427 available for purchase.
VDRC has 2 RNAi stocks for FBgn0005427 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	677 ± 7	4 of 4	22.30	Up
Head	115 ± 7	4 of 4	3.80	Up
Eye	142 ± 10	4 of 4	4.70	Up
Thoracicoabdominal ganglion	369 ± 4	4 of 4	12.20	Up
Salivary gland	43 ± 4	4 of 4	1.43	None
Crop	20 ± 2	3 of 4	0.70	Down
Midgut	28 ± 1	4 of 4	0.90	None
Tubule	31 ± 2	4 of 4	1.00	None
Hindgut	23 ± 2	4 of 4	0.80	None
Heart	11 ± 0	3 of 4	0.38	Down
Fat body	40 ± 12	4 of 4	1.35	None
Ovary	24 ± 1	4 of 4	0.80	None
Testis	4 ± 1	0 of 4	0.20	Down
Male accessory glands	24 ± 1	4 of 4	0.80	None
Virgin spermatheca	31 ± 0	4 of 4	1.05	None
Mated spermatheca	35 ± 3	3 of 4	1.17	None
Adult carcass	18 ± 2	3 of 4	0.60	Down
Larval CNS	600 ± 49	4 of 4	19.82	Up
Larval Salivary gland	37 ± 3	4 of 4	1.22	None
Larval midgut	24 ± 3	4 of 4	0.82	None
Larval tubule	56 ± 2	4 of 4	1.90	Up
Larval hindgut	29 ± 1	4 of 4	0.96	None
Larval fat body	20 ± 2	4 of 4	0.70	None
Larval trachea	28 ± 5	4 of 4	0.94	None
Larval carcass	18 ± 2	4 of 4	0.61	Down
S2 cells (growing)	31 ± 1	4 of 4	1.03	None
Whole fly	30 ± 2	4 of 4

Looking for CG3114-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720