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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31146-RD through 18771 annotations produced 1 hits



Neuroligin 1 (Nlg1):

Annotation Number : CG31146
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051146
Gbrowse : chr3R:3483970-3520040 (+) // 100.0 //
Probeset : 1632895_at
Accessions : protein= NP_731172;, nucleotide= NM_169191;
Interpro : 0004091 // carboxylesterase activity // non-traceable author statement /// 0004091 // carboxylesterase activity // infer
FlyMine data for FBgn0051146.
BDGP gene expression has embryonic in situ data for CG31146: 4 pix of staining in 1 body parts.
Homophila reports that CG31146 is a close match (3e-39) to human gene BSSL;CEL;CELL;MODY8 (NP_001798), a gene associated with Maturity-onset diabetes of the young, type VIII, 609812 (3).
TRiP has 1 RNAi stocks for FBgn0051146 available for purchase.
VDRC has 2 RNAi stocks for FBgn0051146 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.10Down
Head10 ± 12 of 4 0.80None
Eye3 ± 10 of 4 0.23Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.30Down
Salivary gland6 ± 20 of 4 0.50None
Crop46 ± 24 of 4 3.60Up
Midgut3 ± 10 of 4 0.20Down
Tubule4 ± 00 of 4 0.40Down
Hindgut14 ± 04 of 4 1.10None
Heart15 ± 24 of 4 1.14None
Fat body7 ± 10 of 4 0.56None
Ovary1 ± 00 of 4 0.10Down
Testis3 ± 10 of 4 0.20Down
Male accessory glands24 ± 24 of 4 1.80Up
Virgin spermatheca5 ± 10 of 4 0.45Down
Mated spermatheca6 ± 20 of 4 0.46None
Adult carcass34 ± 44 of 4 2.60Up
Larval CNS1 ± 00 of 4 0.10Down
Larval Salivary gland3 ± 10 of 4 0.26Down
Larval midgut1 ± 00 of 4 0.10Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut10 ± 21 of 4 0.76None
Larval fat body2 ± 10 of 4 0.20Down
Larval trachea4 ± 20 of 4 0.31Down
Larval carcass12 ± 14 of 4 0.97None
S2 cells (growing)1 ± 00 of 4 0.13Down
Whole fly13 ± 23 of 4

Looking for CG31146-RD. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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