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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31151-RA through 18771 annotations produced 1 hits



winged eye (wge):

Annotation Number : CG31151
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051151
Gbrowse : chr3R:18537263-18546154 (-) // 100.0 //
Probeset : 1624097_s_at
Accessions : protein= NP_001036746; /// NP_732790; /// NP_732791;, nucleotide= NM_001043281; /// NM_170037; /// NM_170038;
Pathway : 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical i
FlyMine data for FBgn0051151.
BioGrid reports that CG31151 interacts with CG4843 .
VDRC has 2 RNAi stocks for FBgn0051151 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain307 54 of 4 3.00Up
Head96 44 of 4 0.90None
Eye92 54 of 4 0.91None
Thoracicoabdominal ganglion307 164 of 4 3.00Up
Salivary gland104 134 of 4 1.02None
Crop146 54 of 4 1.40Up
Midgut102 64 of 4 1.00None
Tubule204 14 of 4 2.00Up
Hindgut125 74 of 4 1.20None
Heart105 54 of 4 1.03None
Fat body118 234 of 4 1.15None
Ovary236 74 of 4 2.30Up
Testis22 24 of 4 0.20Down
Male accessory glands142 104 of 4 1.40Up
Virgin spermatheca110 114 of 4 1.08None
Mated spermatheca114 54 of 4 1.11None
Adult carcass104 174 of 4 1.00None
Larval CNS261 184 of 4 2.55Up
Larval Salivary gland150 74 of 4 1.47Up
Larval midgut126 34 of 4 1.24Up
Larval tubule167 74 of 4 1.60Up
Larval hindgut156 44 of 4 1.52Up
Larval fat body84 44 of 4 0.80Down
Larval trachea126 54 of 4 1.24Up
Larval carcass150 54 of 4 1.47Up
S2 cells (growing)383 84 of 4 3.74Up
Whole fly102 54 of 4

Looking for CG31151-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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