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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31156-RA through 18771 annotations produced 1 hits



(CG31156):

Annotation Number : CG31156
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051156
Gbrowse : chr3R:18434381-18439349 (-) // 100.0 //
Probeset : 1626615_at
Accessions : protein= NP_651070;, nucleotide= NM_142813;
Pathway : nucleoside
Interpro : nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0006281 // DNA repair // infer
FlyMine data for FBgn0051156.
BioGrid reports that CG31156 interacts with CG3283 CG4936 .
TRiP has 2 RNAi stocks for FBgn0051156 available for purchase.
VDRC has 3 RNAi stocks for FBgn0051156 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain50 ± 34 of 4 1.50Up
Head32 ± 14 of 4 0.90None
Eye28 ± 24 of 4 0.82None
Thoracicoabdominal ganglion49 ± 54 of 4 1.40None
Salivary gland33 ± 70 of 4 0.98None
Crop48 ± 54 of 4 1.40None
Midgut26 ± 14 of 4 0.80Down
Tubule44 ± 24 of 4 1.30Up
Hindgut48 ± 24 of 4 1.40Up
Heart23 ± 24 of 4 0.69Down
Fat body26 ± 24 of 4 0.75Down
Ovary64 ± 34 of 4 1.90Up
Testis30 ± 14 of 4 0.90None
Male accessory glands48 ± 24 of 4 1.40Up
Virgin spermatheca26 ± 14 of 4 0.76Down
Mated spermatheca33 ± 24 of 4 0.95None
Adult carcass52 ± 34 of 4 1.50Up
Larval CNS45 ± 44 of 4 1.31Up
Larval Salivary gland20 ± 14 of 4 0.58Down
Larval midgut18 ± 14 of 4 0.54Down
Larval tubule31 ± 44 of 4 0.90None
Larval hindgut27 ± 24 of 4 0.79None
Larval fat body51 ± 54 of 4 1.50None
Larval trachea31 ± 24 of 4 0.91None
Larval carcass22 ± 14 of 4 0.65Down
S2 cells (growing)55 ± 14 of 4 1.60Up
Whole fly34 ± 24 of 4

Looking for CG31156-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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