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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31163-RB through 18771 annotations produced 2 hits



():

Annotation Number : CG31163
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr3R:17959579-18121855 (+) // 100.0 //
Probeset : 1626457_s_at
Accessions : protein= NP_001036742; /// NP_732703;, nucleotide= NM_001043277; /// NM_169997;
Interpro : 0005070 // SH3/SH2 adaptor activity // inferred from sequence or structural similarity
BioGrid reports that CG31163 interacts with CG32096 CG5482 CG8900 CG9083 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain179 74 of 415.20Up
Head23 14 of 4 1.90Up
Eye11 13 of 4 0.99None
Thoracicoabdominal ganglion115 74 of 4 9.80Up
Salivary gland3 10 of 4 0.28Down
Crop9 01 of 4 0.80None
Midgut7 00 of 4 0.60Down
Tubule7 01 of 4 0.70Down
Hindgut12 04 of 4 1.00None
Heart6 10 of 4 0.53None
Fat body11 14 of 4 0.95None
Ovary11 14 of 4 1.00None
Testis2 00 of 4 0.20Down
Male accessory glands14 21 of 4 1.20None
Virgin spermatheca8 12 of 4 0.75None
Mated spermatheca6 01 of 4 0.53Down
Adult carcass6 20 of 4 0.60None
Larval CNS262 434 of 422.24Up
Larval Salivary gland2 20 of 4 0.23Down
Larval midgut5 00 of 4 0.44Down
Larval tubule13 14 of 4 1.10None
Larval hindgut6 02 of 4 0.53Down
Larval fat body8 21 of 4 0.70None
Larval trachea13 22 of 4 1.12None
Larval carcass14 24 of 4 1.21None
S2 cells (growing)1 00 of 4 0.14Down
Whole fly11 14 of 4



Shal K[+] Channel Interacting Protein (SKIP):

Annotation Number : S.C3R002384
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051163
Gbrowse : chr3R:17959499-17961684 (+) // 100.0 //
Probeset : 1626318_at
Accessions : protein= NP_001036742; /// NP_732703;, nucleotide= NM_001043277; /// NM_169997;
Interpro : 0005070 // SH3/SH2 adaptor activity // inferred from sequence or structural similarity
FlyMine data for FBgn0051163.
VDRC has 3 RNAi stocks for FBgn0051163 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 14 of 4 2.90Up
Head3 10 of 4 0.50None
Eye6 10 of 4 0.96None
Thoracicoabdominal ganglion14 01 of 4 2.30Up
Salivary gland16 30 of 4 2.56None
Crop7 21 of 4 1.20None
Midgut6 10 of 4 1.00None
Tubule6 00 of 4 1.00None
Hindgut10 11 of 4 1.70None
Heart5 10 of 4 0.86None
Fat body11 20 of 4 1.88Up
Ovary2 00 of 4 0.40Down
Testis5 10 of 4 0.80None
Male accessory glands15 11 of 4 2.40Up
Virgin spermatheca6 00 of 4 0.95None
Mated spermatheca6 10 of 4 0.97None
Adult carcass8 31 of 4 1.40None
Larval CNS14 32 of 4 2.37Up
Larval Salivary gland9 30 of 4 1.45None
Larval midgut1 00 of 4 0.28Down
Larval tubule7 20 of 4 1.20None
Larval hindgut5 11 of 4 0.92None
Larval fat body12 40 of 4 2.00None
Larval trachea10 30 of 4 1.69None
Larval carcass7 20 of 4 1.22None
S2 cells (growing)6 10 of 4 1.07None
Whole fly6 10 of 4

Looking for CG31163-RB. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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