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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31164-RA through 18771 annotations produced 1 hits



CG31164 (Ir94a):

Annotation Number : CG31164
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051164
Gbrowse : chr3R:17939148-17940936 (+) // 100.0 //
Probeset : 1641406_at
Accessions : protein= NP_732699;, nucleotide= NM_169993;
FlyMine data for FBgn0051164.
VDRC has 2 RNAi stocks for FBgn0051164 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 01 of 4 2.20None
Head2 ± 00 of 4 1.30None
Eye5 ± 12 of 4 2.49None
Thoracicoabdominal ganglion4 ± 10 of 4 2.10None
Salivary gland4 ± 20 of 4 2.17None
Crop6 ± 20 of 4 2.90None
Midgut4 ± 10 of 4 2.10None
Tubule4 ± 00 of 4 2.10Up
Hindgut3 ± 00 of 4 1.60None
Heart2 ± 00 of 4 1.15None
Fat body6 ± 00 of 4 3.10Up
Ovary3 ± 11 of 4 1.50None
Testis2 ± 00 of 4 1.00None
Male accessory glands9 ± 00 of 4 4.40Up
Virgin spermatheca2 ± 11 of 4 1.18None
Mated spermatheca3 ± 10 of 4 1.85None
Adult carcass2 ± 10 of 4 1.40None
Larval CNS3 ± 00 of 4 1.55None
Larval Salivary gland5 ± 20 of 4 2.67None
Larval midgut3 ± 10 of 4 1.62None
Larval tubule3 ± 10 of 4 1.90None
Larval hindgut3 ± 11 of 4 1.87None
Larval fat body2 ± 10 of 4 1.20None
Larval trachea2 ± 12 of 4 1.39None
Larval carcass5 ± 10 of 4 2.44None
S2 cells (growing)2 ± 10 of 4 1.30None
Whole fly2 ± 10 of 4

Looking for CG31164-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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