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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3117-RA through 18771 annotations produced 1 hits



(CG3117):

Annotation Number : CG3117
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031471
Gbrowse : chr2L:2846083-2847450 (-) // 100.0 //
Probeset : 1627281_at
Accessions : protein= NP_608722;, nucleotide= NM_134878;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0031471.
Homophila reports that CG3117 is a close match (5e-11) to human gene BSSP3;MRT1;PRSS12 (NP_003610), a gene associated with Mental retardation, autosomal recessive 1, 249500 (3).
VDRC has 3 RNAi stocks for FBgn0031471 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 1.90None
Head1 00 of 4 2.20None
Eye0 00 of 4 0.79None
Thoracicoabdominal ganglion2 00 of 4 4.50None
Salivary gland10 30 of 416.96None
Crop2 10 of 4 4.30None
Midgut4 20 of 4 8.00None
Tubule5 00 of 4 9.30Up
Hindgut1 00 of 4 2.50None
Heart0 00 of 4 1.62None
Fat body5 20 of 4 8.58Up
Ovary2 00 of 4 3.80None
Testis10 12 of 416.60Up
Male accessory glands2 00 of 4 4.00None
Virgin spermatheca6 10 of 410.38Up
Mated spermatheca2 10 of 4 3.25None
Adult carcass2 10 of 4 4.70None
Larval CNS2 21 of 4 4.67None
Larval Salivary gland17 13 of 428.79Up
Larval midgut2 00 of 4 3.29None
Larval tubule3 10 of 4 6.30None
Larval hindgut14 24 of 423.38Up
Larval fat body807 484 of 41345.60Up
Larval trachea4 61 of 4 7.96None
Larval carcass9 10 of 415.08Up
S2 cells (growing)190 94 of 4317.79Up
Whole fly0 00 of 4

Looking for CG3117-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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