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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31176-RA through 18771 annotations produced 1 hits



(CG31176):

Annotation Number : CG31176
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051176
Gbrowse : chr3R:17498017-17545380 (-) // 100.0 //
Probeset : 1637788_at
Accessions : protein= NP_732650;, nucleotide= NM_169963;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0051176.
BioGrid reports that CG31176 interacts with CG7886 CG3978 .
VDRC has 2 RNAi stocks for FBgn0051176 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 ± 14 of 4 0.50None
Head74 ± 54 of 4 2.10Up
Eye151 ± 84 of 4 4.31Up
Thoracicoabdominal ganglion13 ± 23 of 4 0.40Down
Salivary gland24 ± 43 of 4 0.69None
Crop162 ± 154 of 4 4.60Up
Midgut11 ± 23 of 4 0.30Down
Tubule11 ± 11 of 4 0.30Down
Hindgut462 ± 174 of 413.20Up
Heart13 ± 13 of 4 0.38Down
Fat body14 ± 24 of 4 0.41Down
Ovary13 ± 14 of 4 0.40Down
Testis13 ± 24 of 4 0.40Down
Male accessory glands17 ± 33 of 4 0.50Down
Virgin spermatheca27 ± 14 of 4 0.78None
Mated spermatheca45 ± 34 of 4 1.29None
Adult carcass23 ± 44 of 4 0.70None
Larval CNS14 ± 04 of 4 0.42Down
Larval Salivary gland12 ± 14 of 4 0.34Down
Larval midgut14 ± 14 of 4 0.40Down
Larval tubule12 ± 13 of 4 0.40Down
Larval hindgut1040 ± 914 of 429.65Up
Larval fat body10 ± 23 of 4 0.30Down
Larval trachea360 ± 404 of 410.27Up
Larval carcass367 ± 154 of 410.46Up
S2 cells (growing)13 ± 14 of 4 0.37Down
Whole fly35 ± 54 of 4

Looking for CG31176-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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