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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31177-RA through 18771 annotations produced 1 hits



CG13420 (CG42335):

Annotation Number : CG31177
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259237
Gbrowse : chr3R:17584495-17586953 (+) // 100.0 //
Probeset : 1634477_at
Accessions : protein= NP_001163680; /// NP_732655;, nucleotide= NM_001170209; /// NM_169967;
Interpro : 0004177 // aminopeptidase activity // non-traceable author statement /// 0004177 // aminopeptidase activity // inferred
FlyMine data for FBgn0259237.
VDRC has 4 RNAi stocks for FBgn0259237 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head2 10 of 4 0.10Down
Eye0 00 of 4 0.02Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland5 10 of 4 0.15Down
Crop1 10 of 4 0.10Down
Midgut691 534 of 419.60Up
Tubule8 00 of 4 0.20Down
Hindgut57 74 of 4 1.60None
Heart0 00 of 4 0.03Down
Fat body1 10 of 4 0.04Down
Ovary1 00 of 4 0.00Down
Testis1 00 of 4 0.10Down
Male accessory glands2 10 of 4 0.10Down
Virgin spermatheca1 00 of 4 0.04Down
Mated spermatheca3 10 of 4 0.11Down
Adult carcass3 10 of 4 0.10Down
Larval CNS2 21 of 4 0.07Down
Larval Salivary gland3 10 of 4 0.09Down
Larval midgut38 64 of 4 1.09None
Larval tubule47 24 of 4 1.40None
Larval hindgut12 14 of 4 0.36Down
Larval fat body2 10 of 4 0.10Down
Larval trachea2 20 of 4 0.07Down
Larval carcass4 10 of 4 0.13Down
S2 cells (growing)2 10 of 4 0.07Down
Whole fly35 64 of 4

Looking for CG31177-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime