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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31189-RA through 18771 annotations produced 1 hits



(CG31189):

Annotation Number : CG31189
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051189
Gbrowse : chr3R:16870642-16871533 (-) // 100.0 //
Probeset : 1631584_at
Accessions : protein= NP_732580;, nucleotide= NM_169942;
FlyMine data for FBgn0051189.
VDRC has 2 RNAi stocks for FBgn0051189 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 01 of 4 0.30Down
Head106 ± 54 of 4 5.80Up
Eye60 ± 54 of 4 3.29Up
Thoracicoabdominal ganglion7 ± 12 of 4 0.40Down
Salivary gland24 ± 81 of 4 1.31None
Crop147 ± 74 of 4 8.10Up
Midgut10 ± 12 of 4 0.60Down
Tubule5 ± 00 of 4 0.30Down
Hindgut23 ± 14 of 4 1.30None
Heart4 ± 11 of 4 0.25Down
Fat body9 ± 13 of 4 0.52Down
Ovary3 ± 11 of 4 0.20Down
Testis3 ± 00 of 4 0.20Down
Male accessory glands11 ± 33 of 4 0.60None
Virgin spermatheca6 ± 02 of 4 0.36Down
Mated spermatheca6 ± 11 of 4 0.33Down
Adult carcass93 ± 64 of 4 5.10Up
Larval CNS3 ± 11 of 4 0.20Down
Larval Salivary gland7 ± 21 of 4 0.42Down
Larval midgut10 ± 02 of 4 0.55Down
Larval tubule5 ± 20 of 4 0.30Down
Larval hindgut7 ± 02 of 4 0.39Down
Larval fat body6 ± 10 of 4 0.40Down
Larval trachea2 ± 10 of 4 0.12Down
Larval carcass5 ± 10 of 4 0.28Down
S2 cells (growing)5 ± 13 of 4 0.33Down
Whole fly18 ± 24 of 4

Looking for CG31189-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime