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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31191-RA through 18771 annotations produced 1 hits



(CG31191):

Annotation Number : CG31191
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051191
Gbrowse : chr3R:16734934-16771252 (-) // 100.0 //
Probeset : 1633815_at
Accessions : protein= NP_001097850; /// NP_732570;, nucleotide= NM_001104380; /// NM_169935;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0051191.
BDGP gene expression has embryonic in situ data for CG31191: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0051191 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain377 124 of 450.30Up
Head65 54 of 4 8.70Up
Eye6 11 of 4 0.93None
Thoracicoabdominal ganglion139 64 of 418.70Up
Salivary gland10 40 of 4 1.42None
Crop4 01 of 4 0.50None
Midgut1 00 of 4 0.20Down
Tubule4 00 of 4 0.60Down
Hindgut2 10 of 4 0.40Down
Heart2 10 of 4 0.34Down
Fat body13 34 of 4 1.81Up
Ovary1 10 of 4 0.20Down
Testis1 00 of 4 0.20Down
Male accessory glands5 20 of 4 0.70None
Virgin spermatheca8 03 of 4 1.10None
Mated spermatheca9 32 of 4 1.27None
Adult carcass1 00 of 4 0.20Down
Larval CNS181 174 of 424.22Up
Larval Salivary gland1 00 of 4 0.15Down
Larval midgut3 11 of 4 0.52None
Larval tubule1 00 of 4 0.20Down
Larval hindgut2 02 of 4 0.34Down
Larval fat body3 21 of 4 0.40None
Larval trachea2 20 of 4 0.35Down
Larval carcass2 00 of 4 0.35Down
S2 cells (growing)1 00 of 4 0.14Down
Whole fly7 14 of 4

Looking for CG31191-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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