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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31196-RA through 18771 annotations produced 1 hits



Suppressor of Ras85D 3-9 (14-3-3epsilon):

Annotation Number : CG31196
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020238
Gbrowse : chr3R:14068252-14074388 (+) // 100.0 //
Probeset : 1628694_a_at
Accessions : protein= NP_732309; /// NP_732310; /// NP_732311; /// NP_732312;, nucleotide= NM_169796; /// NM_169797; /// NM_169798; /// NM_169799;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005694 // chromosome // inferred from direct assay /// 0005737 //
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008426 // protein kinase C inhibitor activity // n
FlyMine data for FBgn0020238.
BioGrid reports that CG31196 interacts with CG2845 CG2845 CG2845 CG2845 CG9375 CG9375 CG9375 CG1389 CG17870 CG17870 CG15793 CG9375 CG9375 CG9375 CG3166 CG8201 CG2845 .
TRiP has 3 RNAi stocks for FBgn0020238 available for purchase.
VDRC has 2 RNAi stocks for FBgn0020238 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2227 704 of 4 1.10None
Head1673 964 of 4 0.80Down
Eye3688 304 of 4 1.77Up
Thoracicoabdominal ganglion1946 1794 of 4 0.90None
Salivary gland1584 474 of 4 0.76Down
Crop1969 274 of 4 0.90None
Midgut2008 444 of 4 1.00None
Tubule2814 534 of 4 1.40Up
Hindgut1991 314 of 4 1.00None
Heart2741 624 of 4 1.32Up
Fat body2214 1294 of 4 1.06None
Ovary2469 344 of 4 1.20Up
Testis1584 404 of 4 0.80Down
Male accessory glands2425 744 of 4 1.20Up
Virgin spermatheca2373 814 of 4 1.14Up
Mated spermatheca2164 374 of 4 1.04None
Adult carcass1299 374 of 4 0.60Down
Larval CNS2667 984 of 4 1.28Up
Larval Salivary gland2959 534 of 4 1.42Up
Larval midgut2656 1324 of 4 1.27Up
Larval tubule3015 714 of 4 1.40Up
Larval hindgut3107 204 of 4 1.49Up
Larval fat body2238 994 of 4 1.10None
Larval trachea4322 1844 of 4 2.07Up
Larval carcass2122 904 of 4 1.02None
S2 cells (growing)3016 484 of 4 1.45Up
Whole fly2083 604 of 4

Looking for CG31196-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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