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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31209-RA through 18771 annotations produced 1 hits



(CG34139):

Annotation Number : CG31209
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0083975
Gbrowse : chr3R:16050936-16070401 (+) // 100.0 //
Probeset : 1622922_at
Accessions : protein= NP_001036730; /// NP_001163661; /// NP_001163662;, nucleotide= NM_001043265; /// NM_001170190; /// NM_001170191;
Interpro : 0004091 // carboxylesterase activity // non-traceable author statement /// 0004091 // carboxylesterase activity // infer
FlyMine data for FBgn0083975.
TRiP has 1 RNAi stocks for FBgn0083975 available for purchase.
VDRC has 7 RNAi stocks for FBgn0083975 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain25 ± 24 of 4 5.60Up
Head5 ± 01 of 4 1.10None
Eye3 ± 10 of 4 0.76None
Thoracicoabdominal ganglion14 ± 33 of 4 3.20None
Salivary gland15 ± 40 of 4 3.31None
Crop4 ± 11 of 4 1.00None
Midgut2 ± 10 of 4 0.50None
Tubule3 ± 00 of 4 0.70None
Hindgut1 ± 10 of 4 0.40None
Heart3 ± 20 of 4 0.79None
Fat body5 ± 10 of 4 1.28None
Ovary2 ± 00 of 4 0.50None
Testis10 ± 14 of 4 2.30Up
Male accessory glands4 ± 10 of 4 1.10None
Virgin spermatheca3 ± 10 of 4 0.79None
Mated spermatheca5 ± 00 of 4 1.13None
Adult carcass5 ± 30 of 4 1.30None
Larval CNS11 ± 34 of 4 2.55Up
Larval Salivary gland5 ± 21 of 4 1.14None
Larval midgut3 ± 00 of 4 0.77None
Larval tubule5 ± 20 of 4 1.10None
Larval hindgut2 ± 00 of 4 0.48None
Larval fat body2 ± 10 of 4 0.60None
Larval trachea2 ± 10 of 4 0.56None
Larval carcass3 ± 10 of 4 0.78None
S2 cells (growing)1 ± 00 of 4 0.23Down
Whole fly4 ± 00 of 4

Looking for CG31209-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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