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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3121-RA through 18771 annotations produced 1 hits



(CG3121):

Annotation Number : CG3121
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034957
Gbrowse : chr2R:19904943-19907418 (+) // 100.0 //
Probeset : 1633263_at
Accessions : protein= NP_611869;, nucleotide= NM_138025;
Pathway : 0005875 // microtubule associated complex // inferred from sequence or structural similarity
Interpro : 0008017 // microtubule binding // inferred from sequence or structural similarity
FlyMine data for FBgn0034957.
TRiP has 1 RNAi stocks for FBgn0034957 available for purchase.
VDRC has 3 RNAi stocks for FBgn0034957 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head2 10 of 4 0.00Down
Eye3 10 of 4 0.07Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland2 10 of 4 0.05Down
Crop3 10 of 4 0.10Down
Midgut1 00 of 4 0.00Down
Tubule1 00 of 4 0.00Down
Hindgut0 00 of 4 0.00Down
Heart1 00 of 4 0.02Down
Fat body1 00 of 4 0.02Down
Ovary0 00 of 4 0.00Down
Testis694 184 of 415.90Up
Male accessory glands0 00 of 4 0.00Down
Virgin spermatheca0 00 of 4 0.01Down
Mated spermatheca0 00 of 4 0.01Down
Adult carcass2 00 of 4 0.10Down
Larval CNS0 00 of 4 0.01Down
Larval Salivary gland1 00 of 4 0.03Down
Larval midgut0 00 of 4 0.01Down
Larval tubule2 10 of 4 0.10Down
Larval hindgut0 00 of 4 0.01Down
Larval fat body74 443 of 4 1.70None
Larval trachea0 00 of 4 0.02Down
Larval carcass1 00 of 4 0.02Down
S2 cells (growing)0 00 of 4 0.01Down
Whole fly43 14 of 4

Looking for CG3121-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime