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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31213-RA through 18771 annotations produced 1 hits



(CG31213):

Annotation Number : CG31213
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051213
Gbrowse : chr3R:15799234-15804734 (+) // 100.0 //
Probeset : 1634422_at
Accessions : protein= NP_732473;, nucleotide= NM_169881;
Pathway : 0016020 // membrane // inferred from sequence or structural similarity
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electr
FlyMine data for FBgn0051213.
Homophila reports that CG31213 is a close match (8e-11) to human gene ABCC7;CF;CFTR;MRP7 (NP_000483), a gene associated with Congenital bilateral absence of vas deferens, 277180 (3);Cystic fibrosis, 219700 (3);Sweat chloride elevation without CF (3);{Hypertrypsinemia, neonatal} (3);{Pancreatitis, idiopathic} (3).
BioGrid reports that CG31213 interacts with CG9986 .
VDRC has 3 RNAi stocks for FBgn0051213 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.30None
Head2 ± 10 of 4 0.30Down
Eye1 ± 00 of 4 0.16Down
Thoracicoabdominal ganglion1 ± 10 of 4 0.20Down
Salivary gland10 ± 30 of 4 1.38None
Crop2 ± 00 of 4 0.40Down
Midgut1 ± 00 of 4 0.10Down
Tubule3 ± 00 of 4 0.50Down
Hindgut1 ± 00 of 4 0.20Down
Heart2 ± 00 of 4 0.33Down
Fat body6 ± 23 of 4 0.90None
Ovary0 ± 00 of 4 0.10Down
Testis138 ± 64 of 418.80Up
Male accessory glands3 ± 10 of 4 0.50Down
Virgin spermatheca6 ± 01 of 4 0.88None
Mated spermatheca13 ± 43 of 4 1.80None
Adult carcass4 ± 20 of 4 0.60None
Larval CNS2 ± 00 of 4 0.35Down
Larval Salivary gland2 ± 00 of 4 0.28Down
Larval midgut1 ± 00 of 4 0.25Down
Larval tubule2 ± 00 of 4 0.30Down
Larval hindgut2 ± 00 of 4 0.32Down
Larval fat body17 ± 82 of 4 2.40None
Larval trachea4 ± 10 of 4 0.61None
Larval carcass2 ± 00 of 4 0.32Down
S2 cells (growing)0 ± 00 of 4 0.12Down
Whole fly7 ± 02 of 4

Looking for CG31213-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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