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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31223-RA through 18771 annotations produced 1 hits



(CG31223):

Annotation Number : CG31223
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051223
Gbrowse : chr3R:16656913-16658186 (+) // 100.0 //
Probeset : 1634122_at
Accessions : protein= NP_732563;, nucleotide= NM_169932;
FlyMine data for FBgn0051223.
BDGP gene expression has embryonic in situ data for CG31223: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0051223 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain52 ± 24 of 4 1.20None
Head34 ± 34 of 4 0.80None
Eye35 ± 44 of 4 0.80None
Thoracicoabdominal ganglion74 ± 54 of 4 1.70Up
Salivary gland48 ± 34 of 4 1.09None
Crop54 ± 34 of 4 1.20None
Midgut52 ± 24 of 4 1.20Up
Tubule34 ± 34 of 4 0.80Down
Hindgut36 ± 24 of 4 0.80Down
Heart24 ± 04 of 4 0.56Down
Fat body46 ± 54 of 4 1.03None
Ovary82 ± 44 of 4 1.80Up
Testis9 ± 13 of 4 0.20Down
Male accessory glands45 ± 34 of 4 1.00None
Virgin spermatheca46 ± 34 of 4 1.05None
Mated spermatheca46 ± 54 of 4 1.05None
Adult carcass36 ± 54 of 4 0.80None
Larval CNS88 ± 54 of 4 1.98Up
Larval Salivary gland67 ± 14 of 4 1.52Up
Larval midgut40 ± 14 of 4 0.90None
Larval tubule50 ± 54 of 4 1.10None
Larval hindgut38 ± 24 of 4 0.86None
Larval fat body39 ± 44 of 4 0.90None
Larval trachea56 ± 84 of 4 1.28None
Larval carcass65 ± 24 of 4 1.48Up
S2 cells (growing)61 ± 24 of 4 1.38Up
Whole fly44 ± 24 of 4

Looking for CG31223-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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