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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31231-RA through 18771 annotations produced 1 hits



(CG31231):

Annotation Number : CG31231
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051231
Gbrowse : chr3R:14491082-14493414 (+) // 100.0 //
Probeset : 1633851_at
Accessions : protein= NP_732363;, nucleotide= NM_169827;
FlyMine data for FBgn0051231.
VDRC has 1 RNAi stocks for FBgn0051231 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.10Down
Head5 ± 10 of 4 0.10Down
Eye5 ± 21 of 4 0.08Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.10Down
Salivary gland15 ± 52 of 4 0.24Down
Crop7 ± 01 of 4 0.10Down
Midgut8 ± 20 of 4 0.10Down
Tubule2 ± 00 of 4 0.00Down
Hindgut6 ± 01 of 4 0.10Down
Heart3 ± 00 of 4 0.05Down
Fat body7 ± 30 of 4 0.12Down
Ovary3 ± 00 of 4 0.00Down
Testis850 ± 154 of 413.30Up
Male accessory glands11 ± 11 of 4 0.20Down
Virgin spermatheca6 ± 21 of 4 0.09Down
Mated spermatheca6 ± 10 of 4 0.09Down
Adult carcass10 ± 30 of 4 0.20Down
Larval CNS5 ± 20 of 4 0.09Down
Larval Salivary gland12 ± 22 of 4 0.20Down
Larval midgut11 ± 11 of 4 0.18Down
Larval tubule8 ± 00 of 4 0.10Down
Larval hindgut5 ± 10 of 4 0.08Down
Larval fat body101 ± 473 of 4 1.60None
Larval trachea3 ± 30 of 4 0.06Down
Larval carcass11 ± 10 of 4 0.18Down
S2 cells (growing)9 ± 12 of 4 0.14Down
Whole fly63 ± 24 of 4

Looking for CG31231-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime