Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31240-RA through 18771 annotations produced 1 hits



reverse polarity (repo):

Annotation Number : CG31240
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011701
Gbrowse : chr3R:14061915-14065326 (+) // 100.0 //
Probeset : 1625431_at
Accessions : protein= NP_477026;, nucleotide= NM_057678;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006357 // regulation of transcription from RNA polymerase II
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement
FlyMine data for FBgn0011701.
BDGP gene expression has embryonic in situ data for repo: 63 pix of staining in 14 body parts.
Homophila reports that CG31240 is a close match (4e-11) to human gene CORD2;CRD;CRX;LCA7 (NP_000545), a gene associated with Cone-rod retinal dystrophy-2, 120970 (3);Leber congenital amaurosis VII (3);Retinitis pigmentosa, late-onset dominant, 268000 (3).
BioGrid reports that CG31240 interacts with CG12245 .
TRiP has 1 RNAi stocks for FBgn0011701 available for purchase.
VDRC has 1 RNAi stocks for FBgn0011701 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain772 184 of 417.70Up
Head352 144 of 4 8.10Up
Eye310 164 of 4 7.10Up
Thoracicoabdominal ganglion1150 354 of 426.30Up
Salivary gland17 13 of 4 0.41Down
Crop12 14 of 4 0.30Down
Midgut5 11 of 4 0.10Down
Tubule7 02 of 4 0.20Down
Hindgut21 14 of 4 0.50Down
Heart13 04 of 4 0.30Down
Fat body19 14 of 4 0.45Down
Ovary3 02 of 4 0.10Down
Testis6 13 of 4 0.10Down
Male accessory glands18 14 of 4 0.40Down
Virgin spermatheca14 04 of 4 0.33Down
Mated spermatheca20 14 of 4 0.46Down
Adult carcass73 74 of 4 1.70Up
Larval CNS708 374 of 416.20Up
Larval Salivary gland5 12 of 4 0.13Down
Larval midgut5 11 of 4 0.12Down
Larval tubule7 13 of 4 0.20Down
Larval hindgut9 04 of 4 0.21Down
Larval fat body6 01 of 4 0.10Down
Larval trachea9 51 of 4 0.21Down
Larval carcass23 24 of 4 0.53Down
S2 cells (growing)3 03 of 4 0.08Down
Whole fly43 34 of 4

Looking for CG31240-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime