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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31248-RA through 18771 annotations produced 1 hits



/// CG31248 (CG31248 /// DsimGD19913):

Annotation Number : CG31248
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051248
Gbrowse : chr3R:2955041-2956630 (+) // 99.39 //
Probeset : 1640854_at
Accessions : protein= NP_649696;, nucleotide= NM_141439;
FlyMine data for FBgn0051248.
BDGP gene expression has embryonic in situ data for CG31248: 4 pix of staining in 1 body parts.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain971 ± 54 of 4 8.60Up
Head588 ± 294 of 4 5.20Up
Eye118 ± 194 of 4 1.04None
Thoracicoabdominal ganglion1668 ± 564 of 414.70Up
Salivary gland125 ± 84 of 4 1.11None
Crop143 ± 54 of 4 1.30Up
Midgut350 ± 174 of 4 3.10Up
Tubule202 ± 704 of 4 1.80None
Hindgut120 ± 34 of 4 1.10None
Heart142 ± 74 of 4 1.26Up
Fat body329 ± 454 of 4 2.90Up
Ovary5 ± 10 of 4 0.10Down
Testis9 ± 10 of 4 0.10Down
Male accessory glands3103 ± 654 of 427.40Up
Virgin spermatheca315 ± 184 of 4 2.78Up
Mated spermatheca506 ± 364 of 4 4.47Up
Adult carcass180 ± 114 of 4 1.60Up
Larval CNS13 ± 24 of 4 0.12Down
Larval Salivary gland3 ± 10 of 4 0.03Down
Larval midgut50 ± 84 of 4 0.45Down
Larval tubule14 ± 20 of 4 0.10Down
Larval hindgut32 ± 14 of 4 0.29Down
Larval fat body10 ± 10 of 4 0.10Down
Larval trachea13 ± 54 of 4 0.12Down
Larval carcass12 ± 10 of 4 0.11Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly113 ± 74 of 4

Looking for CG31248-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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