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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31265-RA through 18771 annotations produced 1 hits



(CG31265):

Annotation Number : CG31265
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051265
Gbrowse : chr3R:12953945-12954842 (+) // 99.56 //
Probeset : 1636711_at
Accessions : protein= NP_650599;, nucleotide= NM_142342;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0051265.
BDGP gene expression has embryonic in situ data for CG31265: 4 pix of staining in 1 body parts.
Homophila reports that CG31265 is a close match (8e-11) to human gene C1S (NP_958850), a gene associated with C1r/C1s deficiency, combined (1);C1s deficiency, isolated (3).
VDRC has 1 RNAi stocks for FBgn0051265 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland9 ± 30 of 4 0.10Down
Crop3 ± 10 of 4 0.00Down
Midgut911 ± 534 of 4 9.20Up
Tubule6 ± 40 of 4 0.10Down
Hindgut127 ± 94 of 4 1.30None
Heart0 ± 00 of 4 0.01Down
Fat body3 ± 30 of 4 0.04Down
Ovary0 ± 00 of 4 0.00Down
Testis0 ± 00 of 4 0.00Down
Male accessory glands0 ± 00 of 4 0.00Down
Virgin spermatheca3 ± 10 of 4 0.04Down
Mated spermatheca6 ± 20 of 4 0.07Down
Adult carcass1 ± 00 of 4 0.00Down
Larval CNS2 ± 20 of 4 0.02Down
Larval Salivary gland1 ± 00 of 4 0.01Down
Larval midgut585 ± 274 of 4 5.93Up
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut8 ± 40 of 4 0.08Down
Larval fat body1 ± 00 of 4 0.00Down
Larval trachea0 ± 00 of 4 0.01Down
Larval carcass2 ± 00 of 4 0.02Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly98 ± 144 of 4

Looking for CG31265-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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