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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG31267-RA through 18771 annotations produced 1 hits


(CG31267):

Annotation Number : CG31267
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051267
Gbrowse : chr3R:12959941-12960935 (+) // 100.0 //
Probeset : 1628643_at
Accessions : protein= NP_732214;, nucleotide= NM_169751;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0051267.
Homophila reports that CG31267 is a close match (4e-12) to human gene F10 (NP_000495), a gene associated with Factor X deficiency (3).
VDRC has 1 RNAi stocks for FBgn0051267 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye4 ± 10 of 4 0.03Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.00Down
Salivary gland2 ± 00 of 4 0.02Down
Crop5 ± 10 of 4 0.00Down
Midgut916 ± 484 of 4 5.70Up
Tubule47 ± 431 of 4 0.30Down
Hindgut2307 ± 404 of 414.30Up
Heart1 ± 00 of 4 0.01Down
Fat body2 ± 10 of 4 0.01Down
Ovary1 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands2 ± 10 of 4 0.00Down
Virgin spermatheca4 ± 20 of 4 0.02Down
Mated spermatheca6 ± 20 of 4 0.04Down
Adult carcass2 ± 10 of 4 0.00Down
Larval CNS1 ± 00 of 4 0.01Down
Larval Salivary gland0 ± 00 of 4 0.01Down
Larval midgut875 ± 544 of 4 5.42Up
Larval tubule2 ± 00 of 4 0.00Down
Larval hindgut407 ± 1104 of 4 2.52None
Larval fat body1 ± 00 of 4 0.00Down
Larval trachea1 ± 10 of 4 0.01Down
Larval carcass0 ± 00 of 4 0.01Down
S2 cells (growing)0 ± 00 of 4 0.00Down
Whole fly161 ± 174 of 4

Looking for CG31267-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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