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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31272-RA through 18771 annotations produced 1 hits



(CG31272):

Annotation Number : CG31272
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051272
Gbrowse : chr3R:6582012-6585113 (-) // 100.0 //
Probeset : 1639934_at
Accessions : protein= NP_650013;, nucleotide= NM_141756;
Pathway : 0030672 // synaptic vesicle membrane // inferred from sequence or structural similarity
Interpro : 0005215 // transporter activity // inferred from sequence or structural similarity /// 0016298 // lipase activity // inf
FlyMine data for FBgn0051272.
BDGP gene expression has embryonic in situ data for CG31272: 30 pix of staining in 3 body parts.
TRiP has 1 RNAi stocks for FBgn0051272 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 12 of 4 0.10Down
Head15 14 of 4 0.10Down
Eye12 24 of 4 0.08Down
Thoracicoabdominal ganglion23 24 of 4 0.20Down
Salivary gland13 11 of 4 0.09Down
Crop4 00 of 4 0.00Down
Midgut6 02 of 4 0.00Down
Tubule6019 1874 of 439.90Up
Hindgut180 114 of 4 1.20None
Heart8 12 of 4 0.05Down
Fat body23 262 of 4 0.15Down
Ovary2 11 of 4 0.00Down
Testis17 14 of 4 0.10Down
Male accessory glands10 01 of 4 0.10Down
Virgin spermatheca14 53 of 4 0.09Down
Mated spermatheca8 23 of 4 0.06Down
Adult carcass13 21 of 4 0.10Down
Larval CNS3 22 of 4 0.02Down
Larval Salivary gland3 10 of 4 0.03Down
Larval midgut4 10 of 4 0.03Down
Larval tubule2766 954 of 418.30Up
Larval hindgut30 84 of 4 0.20Down
Larval fat body9 12 of 4 0.10Down
Larval trachea2 10 of 4 0.02Down
Larval carcass4 00 of 4 0.03Down
S2 cells (growing)3 01 of 4 0.02Down
Whole fly151 74 of 4

Looking for CG31272-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime