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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31278-RA through 18771 annotations produced 1 hits



(CG31278):

Annotation Number : CG31278
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051278
Gbrowse : chr3R:6533196-6534048 (-) // 100.0 //
Probeset : 1633190_at
Accessions : protein= NP_731494;, nucleotide= NM_169354;
Interpro : 0005506 // iron ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from el
FlyMine data for FBgn0051278.
VDRC has 1 RNAi stocks for FBgn0051278 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain40 ± 04 of 4 1.00None
Head28 ± 14 of 4 0.70Down
Eye24 ± 24 of 4 0.60Down
Thoracicoabdominal ganglion32 ± 14 of 4 0.80None
Salivary gland31 ± 32 of 4 0.78None
Crop30 ± 24 of 4 0.80None
Midgut43 ± 13 of 4 1.10None
Tubule20 ± 12 of 4 0.50Down
Hindgut38 ± 14 of 4 1.00None
Heart31 ± 14 of 4 0.78None
Fat body27 ± 34 of 4 0.68Down
Ovary51 ± 24 of 4 1.30Up
Testis16 ± 02 of 4 0.40Down
Male accessory glands17 ± 20 of 4 0.40Down
Virgin spermatheca20 ± 24 of 4 0.51Down
Mated spermatheca19 ± 14 of 4 0.48Down
Adult carcass30 ± 43 of 4 0.80None
Larval CNS39 ± 54 of 4 0.98None
Larval Salivary gland48 ± 44 of 4 1.20None
Larval midgut29 ± 10 of 4 0.74Down
Larval tubule30 ± 14 of 4 0.80Down
Larval hindgut37 ± 24 of 4 0.93None
Larval fat body18 ± 11 of 4 0.50Down
Larval trachea46 ± 04 of 4 1.16None
Larval carcass31 ± 14 of 4 0.80None
S2 cells (growing)33 ± 14 of 4 0.83None
Whole fly39 ± 34 of 4

Looking for CG31278-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime