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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG31289-RA through 18771 annotations produced 1 hits

Diphthamide methyltransferase (Dph5):

Annotation Number : CG31289
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024558
Gbrowse : chr3R:18407748-18408950 (-) // 100.0 //
Probeset : 1627661_at
Accessions : protein= NP_524452;, nucleotide= NM_079728;
Interpro : 0004164 // diphthine synthase activity // inferred from sequence or structural similarity /// 0004164 // diphthine synth
FlyMine data for FBgn0024558.
BDGP gene expression has embryonic in situ data for Dph5: 19 pix of staining in 14 body parts.
BioGrid reports that CG31289 interacts with CG8942 .
TRiP has 1 RNAi stocks for FBgn0024558 available for purchase.
VDRC has 3 RNAi stocks for FBgn0024558 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain127 44 of 4 0.30Down
Head159 64 of 4 0.40Down
Eye203 34 of 4 0.49Down
Thoracicoabdominal ganglion139 34 of 4 0.30Down
Salivary gland254 154 of 4 0.61Down
Crop169 74 of 4 0.40Down
Midgut160 84 of 4 0.40Down
Tubule141 254 of 4 0.30Down
Hindgut113 14 of 4 0.30Down
Heart139 44 of 4 0.33Down
Fat body233 94 of 4 0.56Down
Ovary651 74 of 4 1.60Up
Testis80 24 of 4 0.20Down
Male accessory glands377 394 of 4 0.90None
Virgin spermatheca134 204 of 4 0.32Down
Mated spermatheca207 94 of 4 0.49Down
Adult carcass173 104 of 4 0.40Down
Larval CNS432 214 of 4 1.03None
Larval Salivary gland277 164 of 4 0.66Down
Larval midgut114 94 of 4 0.27Down
Larval tubule52 24 of 4 0.10Down
Larval hindgut151 74 of 4 0.36Down
Larval fat body50 64 of 4 0.10Down
Larval trachea373 514 of 4 0.89None
Larval carcass268 364 of 4 0.64Down
S2 cells (growing)319 144 of 4 0.76Down
Whole fly419 304 of 4

Looking for CG31289-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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