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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31292-RA through 18771 annotations produced 1 hits



/// (CG3303 /// CR31292):

Annotation Number : CG31292
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038381 /// FBgn0051292
Gbrowse : chr3R:11734160-11734664 (+) // 100.0 // /// chr3R:11731968-11732472 (+) // 100.0 // /// chrUextra:531849-532353 (-) // 100.0 //
Probeset : 1632213_s_at
Accessions : protein= NP_650508; /// NP_732084;, nucleotide= NM_142251; /// NM_169681;
Interpro : 0004252 // serine-type endopeptidase activity // inferred from sequence or structural similarity /// 0005515 // protein
FlyMine data for FBgn0038381 /// FBgn0051292.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain27 ± 04 of 4 0.40Down
Head48 ± 44 of 4 0.80None
Eye52 ± 44 of 4 0.83None
Thoracicoabdominal ganglion24 ± 44 of 4 0.40Down
Salivary gland16 ± 31 of 4 0.26Down
Crop131 ± 74 of 4 2.10Up
Midgut6 ± 10 of 4 0.10Down
Tubule48 ± 64 of 4 0.80Down
Hindgut77 ± 54 of 4 1.20None
Heart28 ± 34 of 4 0.46Down
Fat body3 ± 20 of 4 0.06Down
Ovary124 ± 14 of 4 2.00Up
Testis6 ± 01 of 4 0.10Down
Male accessory glands2 ± 10 of 4 0.00Down
Virgin spermatheca2 ± 10 of 4 0.04Down
Mated spermatheca3 ± 10 of 4 0.05Down
Adult carcass30 ± 24 of 4 0.50Down
Larval CNS45 ± 34 of 4 0.72None
Larval Salivary gland56 ± 94 of 4 0.90None
Larval midgut6 ± 10 of 4 0.10Down
Larval tubule95 ± 84 of 4 1.50Up
Larval hindgut60 ± 34 of 4 0.97None
Larval fat body6 ± 11 of 4 0.10Down
Larval trachea271 ± 344 of 4 4.32Up
Larval carcass45 ± 44 of 4 0.72None
S2 cells (growing)167 ± 44 of 4 2.67Up
Whole fly62 ± 74 of 4

Looking for CG31292-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime