FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG31293-RA through 18771 annotations produced 1 hits

recombination-defective (rec):

Annotation Number : CG31293
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003227
Gbrowse : chr3R:11648708-11658354 (-) // 100.0 //
Probeset : 1625964_at
Accessions : protein= NP_732072;, nucleotide= NM_169674;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // traceable author statement /// 00056
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electro
FlyMine data for FBgn0003227.
Homophila reports that CG31293 is a close match (5e-31) to human gene MCM6 (NP_005906), a gene associated with Lactase persistance/nonpersistance, 223100 (3);[Tall stature, susceptibility to], 606255 (3).
VDRC has 2 RNAi stocks for FBgn0003227 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	69 ± 6	4 of 4	3.10	Up
Head	47 ± 4	4 of 4	2.10	Up
Eye	174 ± 16	4 of 4	7.86	Up
Thoracicoabdominal ganglion	95 ± 8	4 of 4	4.30	Up
Salivary gland	12 ± 1	1 of 4	0.56	Down
Crop	14 ± 1	4 of 4	0.70	None
Midgut	4 ± 1	0 of 4	0.20	Down
Tubule	5 ± 0	0 of 4	0.20	Down
Hindgut	25 ± 2	4 of 4	1.20	None
Heart	7 ± 1	2 of 4	0.35	Down
Fat body	10 ± 0	4 of 4	0.47	Down
Ovary	58 ± 4	4 of 4	2.60	Up
Testis	6 ± 0	4 of 4	0.30	Down
Male accessory glands	270 ± 19	4 of 4	12.10	Up
Virgin spermatheca	14 ± 0	4 of 4	0.67	None
Mated spermatheca	12 ± 2	4 of 4	0.57	Down
Adult carcass	13 ± 4	2 of 4	0.60	None
Larval CNS	54 ± 7	4 of 4	2.44	Up
Larval Salivary gland	5 ± 0	3 of 4	0.26	Down
Larval midgut	4 ± 1	0 of 4	0.18	Down
Larval tubule	8 ± 0	4 of 4	0.40	Down
Larval hindgut	8 ± 1	4 of 4	0.38	Down
Larval fat body	8 ± 2	2 of 4	0.40	Down
Larval trachea	15 ± 3	4 of 4	0.70	None
Larval carcass	10 ± 0	4 of 4	0.48	Down
S2 cells (growing)	7 ± 1	3 of 4	0.32	Down
Whole fly	22 ± 3	4 of 4

Looking for CG31293-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720