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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31301-RA through 18771 annotations produced 1 hits



(CG31301):

Annotation Number : CG31301
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051301
Gbrowse : chr3R:11171952-11173735 (+) // 100.0 //
Probeset : 1635394_at
Accessions : protein= NP_650449;, nucleotide= NM_142192;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation
FlyMine data for FBgn0051301.
BDGP gene expression has embryonic in situ data for CG31301: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0051301 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain225 64 of 4 0.60Down
Head223 34 of 4 0.60Down
Eye230 144 of 4 0.65Down
Thoracicoabdominal ganglion246 84 of 4 0.70Down
Salivary gland188 134 of 4 0.53Down
Crop251 64 of 4 0.70Down
Midgut206 74 of 4 0.60Down
Tubule383 44 of 4 1.10Up
Hindgut224 84 of 4 0.60Down
Heart206 74 of 4 0.58Down
Fat body217 114 of 4 0.62Down
Ovary568 144 of 4 1.60Up
Testis202 114 of 4 0.60Down
Male accessory glands194 34 of 4 0.50Down
Virgin spermatheca457 304 of 4 1.29Up
Mated spermatheca441 494 of 4 1.25None
Adult carcass265 204 of 4 0.70Down
Larval CNS659 224 of 4 1.86Up
Larval Salivary gland247 74 of 4 0.70Down
Larval midgut133 84 of 4 0.38Down
Larval tubule314 54 of 4 0.90None
Larval hindgut224 54 of 4 0.63Down
Larval fat body200 54 of 4 0.60Down
Larval trachea375 344 of 4 1.06None
Larval carcass301 204 of 4 0.85None
S2 cells (growing)335 74 of 4 0.95None
Whole fly353 134 of 4

Looking for CG31301-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime