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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31305-RI through 18771 annotations produced 1 hits



(CG6783):

Annotation Number : CG31305
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037913
Gbrowse : chr3R:7389783-7392771 (-) // 100.0 //
Probeset : 1627014_a_at
Accessions : protein= NP_001027179; /// NP_001027180; /// NP_001027181;, nucleotide= NM_001032008; /// NM_001032009; /// NM_001032010;
Pathway : 0005739 // mitochondrion // inferred from direct assay /// 0005743 // mitochondrial inner membrane // inferred from elec
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005488 // binding // inferred from electroni
FlyMine data for FBgn0037913.
TRiP has 2 RNAi stocks for FBgn0037913 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2360 ± 604 of 4 0.60Down
Head4546 ± 2154 of 4 1.20Up
Eye8120 ± 1934 of 4 2.19Up
Thoracicoabdominal ganglion2944 ± 764 of 4 0.80Down
Salivary gland113 ± 74 of 4 0.03Down
Crop6502 ± 3964 of 4 1.80Up
Midgut5971 ± 1984 of 4 1.60Up
Tubule3212 ± 3784 of 4 0.90None
Hindgut5282 ± 1674 of 4 1.40Up
Heart5612 ± 1884 of 4 1.51Up
Fat body5626 ± 4154 of 4 1.52Up
Ovary3554 ± 654 of 4 1.00None
Testis1150 ± 324 of 4 0.30Down
Male accessory glands326 ± 344 of 4 0.10Down
Virgin spermatheca5146 ± 424 of 4 1.39Up
Mated spermatheca4239 ± 3394 of 4 1.14None
Adult carcass5289 ± 2004 of 4 1.40Up
Larval CNS3400 ± 3014 of 4 0.92None
Larval Salivary gland5215 ± 2164 of 4 1.41Up
Larval midgut7149 ± 2494 of 4 1.93Up
Larval tubule3252 ± 1904 of 4 0.90None
Larval hindgut4122 ± 1914 of 4 1.11None
Larval fat body9514 ± 11254 of 4 2.60Up
Larval trachea4654 ± 3324 of 4 1.25Up
Larval carcass2679 ± 1954 of 4 0.72Down
S2 cells (growing)3545 ± 264 of 4 0.96None
Whole fly3710 ± 2494 of 4

Looking for CG31305-RI. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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