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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31321-RB through 18771 annotations produced 1 hits



(CG31321):

Annotation Number : CG31321
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051321
Gbrowse : chr3R:10136088-10140134 (+) // 100.0 //
Probeset : 1637195_at
Accessions : protein= NP_731899;, nucleotide= NM_169576;
FlyMine data for FBgn0051321.
BDGP gene expression has embryonic in situ data for CG31321: 10 pix of staining in 5 body parts.
VDRC has 3 RNAi stocks for FBgn0051321 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 10 of 4 0.70Down
Head140 74 of 4 8.50Up
Eye51 24 of 4 3.14Up
Thoracicoabdominal ganglion47 34 of 4 2.90Up
Salivary gland4 10 of 4 0.25Down
Crop268 94 of 416.30Up
Midgut3 10 of 4 0.20Down
Tubule1 00 of 4 0.10Down
Hindgut7 20 of 4 0.50Down
Heart3 10 of 4 0.24Down
Fat body19 70 of 4 1.18None
Ovary0 00 of 4 0.00Down
Testis6 10 of 4 0.40Down
Male accessory glands2 00 of 4 0.10Down
Virgin spermatheca1 00 of 4 0.07Down
Mated spermatheca1 00 of 4 0.08Down
Adult carcass143 124 of 4 8.70Up
Larval CNS8 10 of 4 0.50Down
Larval Salivary gland2 10 of 4 0.14Down
Larval midgut5 10 of 4 0.33Down
Larval tubule1 00 of 4 0.10Down
Larval hindgut78 54 of 4 4.74Up
Larval fat body7 20 of 4 0.50Down
Larval trachea170 704 of 410.35Up
Larval carcass950 414 of 457.58Up
S2 cells (growing)2 10 of 4 0.17Down
Whole fly16 12 of 4

Looking for CG31321-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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