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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31344-RA through 18771 annotations produced 1 hits



(CG31344):

Annotation Number : CG31344
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051344
Gbrowse : chr3R:11049090-11051144 (-) // 100.0 //
Probeset : 1626320_at
Accessions : protein= NP_650433;, nucleotide= NM_142176;
FlyMine data for FBgn0051344.
BDGP gene expression has embryonic in situ data for CG31344: 15 pix of staining in 10 body parts.
VDRC has 5 RNAi stocks for FBgn0051344 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain547 ± 204 of 4 5.60Up
Head385 ± 164 of 4 4.00Up
Eye1384 ± 824 of 414.29Up
Thoracicoabdominal ganglion684 ± 204 of 4 7.10Up
Salivary gland107 ± 50 of 4 1.11None
Crop58 ± 40 of 4 0.60Down
Midgut52 ± 71 of 4 0.50Down
Tubule16 ± 10 of 4 0.20Down
Hindgut79 ± 63 of 4 0.80None
Heart61 ± 04 of 4 0.63Down
Fat body43 ± 70 of 4 0.45Down
Ovary177 ± 104 of 4 1.80Up
Testis46 ± 34 of 4 0.50Down
Male accessory glands49 ± 31 of 4 0.50Down
Virgin spermatheca52 ± 30 of 4 0.54Down
Mated spermatheca75 ± 102 of 4 0.78None
Adult carcass88 ± 50 of 4 0.90None
Larval CNS173 ± 104 of 4 1.79Up
Larval Salivary gland138 ± 64 of 4 1.43Up
Larval midgut69 ± 74 of 4 0.72Down
Larval tubule16 ± 50 of 4 0.20Down
Larval hindgut143 ± 54 of 4 1.48Up
Larval fat body431 ± 274 of 4 4.50Up
Larval trachea187 ± 294 of 4 1.93Up
Larval carcass172 ± 44 of 4 1.79Up
S2 cells (growing)237 ± 84 of 4 2.45Up
Whole fly96 ± 64 of 4

Looking for CG31344-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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