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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3136-RA through 18771 annotations produced 1 hits



CG3136 (Atf6):

Annotation Number : CG3136
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033010
Gbrowse : chr2R:1032201-1042266 (+) // 100.0 //
Probeset : 1641747_s_at
Accessions : protein= NP_610159; /// NP_724403; /// NP_995745;, nucleotide= NM_136315; /// NM_165423; /// NM_206023;
Pathway : DNA-dependent // inferred from electronic annotation"
Interpro : 0005634 // nucleus // inferred from electronic annotation
FlyMine data for FBgn0033010.
BDGP gene expression has embryonic in situ data for CG3136: 43 pix of staining in 17 body parts.
BioGrid reports that CG3136 interacts with CG3342 .
TRiP has 1 RNAi stocks for FBgn0033010 available for purchase.
VDRC has 1 RNAi stocks for FBgn0033010 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain283 74 of 4 2.30Up
Head169 94 of 4 1.40Up
Eye109 54 of 4 0.89None
Thoracicoabdominal ganglion208 64 of 4 1.70Up
Salivary gland298 294 of 4 2.41Up
Crop155 104 of 4 1.30None
Midgut254 94 of 4 2.10Up
Tubule251 84 of 4 2.00Up
Hindgut204 84 of 4 1.70Up
Heart110 44 of 4 0.89None
Fat body269 434 of 4 2.17Up
Ovary204 104 of 4 1.60Up
Testis35 44 of 4 0.30Down
Male accessory glands402 234 of 4 3.20Up
Virgin spermatheca359 324 of 4 2.91Up
Mated spermatheca386 524 of 4 3.12Up
Adult carcass157 74 of 4 1.30Up
Larval CNS245 384 of 4 1.98Up
Larval Salivary gland249 194 of 4 2.02Up
Larval midgut339 154 of 4 2.74Up
Larval tubule345 104 of 4 2.80Up
Larval hindgut364 194 of 4 2.95Up
Larval fat body361 194 of 4 2.90Up
Larval trachea99 304 of 4 0.80None
Larval carcass223 164 of 4 1.80Up
S2 cells (growing)284 134 of 4 2.30Up
Whole fly123 44 of 4

Looking for CG3136-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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