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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG31361-RA through 18771 annotations produced 1 hits

dpr17 (dpr17):

Annotation Number : CG31361
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051361
Gbrowse : chr3R:7920599-7937144 (+) // 100.0 //
Probeset : 1638037_a_at
Accessions : protein= NP_001138039; /// NP_731670; /// NP_731671;, nucleotide= NM_001144567; /// NM_169451; /// NM_169452;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0051361.
BDGP gene expression has embryonic in situ data for CG31361: 32 pix of staining in 10 body parts.
BioGrid reports that CG31361 interacts with CG6662 CG7203 CG5386 .
TRiP has 1 RNAi stocks for FBgn0051361 available for purchase.
VDRC has 2 RNAi stocks for FBgn0051361 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain279 94 of 4 3.30Up
Head48 44 of 4 0.60Down
Eye15 13 of 4 0.18Down
Thoracicoabdominal ganglion234 54 of 4 2.70Up
Salivary gland14 40 of 4 0.16Down
Crop12 12 of 4 0.10Down
Midgut12 31 of 4 0.10Down
Tubule7 00 of 4 0.10Down
Hindgut23 14 of 4 0.30Down
Heart1 00 of 4 0.02Down
Fat body1 00 of 4 0.02Down
Ovary1 00 of 4 0.00Down
Testis930 34 of 410.90Up
Male accessory glands7 30 of 4 0.10Down
Virgin spermatheca8 20 of 4 0.10Down
Mated spermatheca8 11 of 4 0.10Down
Adult carcass10 20 of 4 0.10Down
Larval CNS80 74 of 4 0.95None
Larval Salivary gland14 30 of 4 0.17Down
Larval midgut14 30 of 4 0.17Down
Larval tubule4 10 of 4 0.10Down
Larval hindgut14 32 of 4 0.17Down
Larval fat body94 474 of 4 1.10None
Larval trachea17 142 of 4 0.21Down
Larval carcass30 12 of 4 0.36Down
S2 cells (growing)234 54 of 4 2.74Up
Whole fly85 64 of 4

Looking for CG31361-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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