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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31363-RB through 18771 annotations produced 2 hits



/// Jupiter (CG1832 /// Jupiter):

Annotation Number : CG31363
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051363
Gbrowse : chr3R:7416610-7445656 (-) // 100.0 //
Probeset : 1635363_a_at
Accessions : protein= NP_001014498; /// NP_610137; /// NP_731595; /// NP_731596; /// NP_731597; /// NP_731598; /// NP_731599; /// NP_731600;, nucleotide= NM_001014498; /// NM_136293; /// NM_169404; /// NM_169405; /// NM_169406; /// NM_169407; /// NM_169408; /// NM_169409;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay ///
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005200 // structural constituent of cytoskel
FlyMine data for FBgn0051363.
BDGP gene expression has embryonic in situ data for CG31363: 26 pix of staining in 17 body parts.
BioGrid reports that CG31363 interacts with CG31644 CG32406 CG33135 CG4254 CG4789 CG5005 CG5395 CG5441 CG6046 CG6667 .
VDRC has 3 RNAi stocks for FBgn0051363 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1197 ± 284 of 4 1.80Up
Head416 ± 64 of 4 0.60Down
Eye838 ± 184 of 4 1.23Up
Thoracicoabdominal ganglion1354 ± 324 of 4 2.00Up
Salivary gland38 ± 44 of 4 0.06Down
Crop56 ± 24 of 4 0.10Down
Midgut133 ± 64 of 4 0.20Down
Tubule27 ± 24 of 4 0.00Down
Hindgut130 ± 74 of 4 0.20Down
Heart1427 ± 394 of 4 2.09Up
Fat body55 ± 224 of 4 0.08Down
Ovary1188 ± 74 of 4 1.70Up
Testis2421 ± 534 of 4 3.50Up
Male accessory glands50 ± 84 of 4 0.10Down
Virgin spermatheca24 ± 14 of 4 0.04Down
Mated spermatheca25 ± 44 of 4 0.04Down
Adult carcass229 ± 204 of 4 0.30Down
Larval CNS1423 ± 1234 of 4 2.08Up
Larval Salivary gland185 ± 324 of 4 0.27Down
Larval midgut168 ± 74 of 4 0.25Down
Larval tubule1225 ± 1304 of 4 1.80Up
Larval hindgut391 ± 474 of 4 0.57Down
Larval fat body852 ± 1864 of 4 1.20None
Larval trachea366 ± 664 of 4 0.54Down
Larval carcass285 ± 434 of 4 0.42Down
S2 cells (growing)2395 ± 284 of 4 3.51Up
Whole fly683 ± 84 of 4



Jupiter (Jupiter):

Annotation Number : CG31363
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051363
Gbrowse : chr3R:7416610-7417966 (-) // 100.0 //
Probeset : 1625214_at
Accessions : protein= NP_731595; /// NP_731596; /// NP_731597; /// NP_731598; /// NP_731599; /// NP_731600;, nucleotide= NM_169404; /// NM_169405; /// NM_169406; /// NM_169407; /// NM_169408; /// NM_169409;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay ///
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005200 // structural constituent of cytoskel
FlyMine data for FBgn0051363.
BDGP gene expression has embryonic in situ data for CG31363: 26 pix of staining in 17 body parts.
BioGrid reports that CG31363 interacts with CG31644 CG32406 CG33135 CG4254 CG4789 CG5005 CG5395 CG5441 CG6046 CG6667 .
VDRC has 3 RNAi stocks for FBgn0051363 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain41 ± 34 of 4 0.50Down
Head5 ± 10 of 4 0.10Down
Eye7 ± 10 of 4 0.08Down
Thoracicoabdominal ganglion39 ± 14 of 4 0.40Down
Salivary gland4 ± 00 of 4 0.04Down
Crop3 ± 10 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut3 ± 10 of 4 0.00Down
Heart7 ± 10 of 4 0.08Down
Fat body3 ± 10 of 4 0.03Down
Ovary5 ± 10 of 4 0.10Down
Testis1494 ± 384 of 416.10Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca3 ± 10 of 4 0.04Down
Mated spermatheca6 ± 20 of 4 0.07Down
Adult carcass11 ± 50 of 4 0.10Down
Larval CNS22 ± 44 of 4 0.24Down
Larval Salivary gland3 ± 10 of 4 0.04Down
Larval midgut6 ± 20 of 4 0.07Down
Larval tubule14 ± 20 of 4 0.20Down
Larval hindgut4 ± 10 of 4 0.05Down
Larval fat body193 ± 1233 of 4 2.10None
Larval trachea11 ± 131 of 4 0.12Down
Larval carcass5 ± 10 of 4 0.05Down
S2 cells (growing)24 ± 24 of 4 0.27Down
Whole fly92 ± 84 of 4

Looking for CG31363-RB. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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