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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31365-RA through 18771 annotations produced 1 hits



(CG31365):

Annotation Number : CG31365
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051365
Gbrowse : chr3R:18949675-18952139 (-) // 100.0 //
Probeset : 1633462_at
Accessions : protein= NP_732827;, nucleotide= NM_170050;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
Interpro : 0003676 // nucleic acid binding // inferred from sequence or structural similarity /// 0003676 // nucleic acid binding /
FlyMine data for FBgn0051365.
BDGP gene expression has embryonic in situ data for CG31365: 27 pix of staining in 20 body parts.
Homophila reports that CG31365 is a close match (5e-11) to human gene HPE5;ZIC2 (NP_009060), a gene associated with Holoprosencephaly-5, 609637 (3).
BioGrid reports that CG31365 interacts with CG7574 .
VDRC has 2 RNAi stocks for FBgn0051365 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain63 24 of 4 0.50Down
Head44 14 of 4 0.40Down
Eye55 34 of 4 0.45Down
Thoracicoabdominal ganglion50 34 of 4 0.40Down
Salivary gland78 34 of 4 0.63Down
Crop77 24 of 4 0.60Down
Midgut52 34 of 4 0.40Down
Tubule58 14 of 4 0.50Down
Hindgut52 14 of 4 0.40Down
Heart59 44 of 4 0.48Down
Fat body34 44 of 4 0.28Down
Ovary271 34 of 4 2.20Up
Testis32 14 of 4 0.30Down
Male accessory glands94 44 of 4 0.80None
Virgin spermatheca54 34 of 4 0.44Down
Mated spermatheca51 44 of 4 0.41Down
Adult carcass49 14 of 4 0.40Down
Larval CNS175 64 of 4 1.42Up
Larval Salivary gland81 54 of 4 0.66Down
Larval midgut39 14 of 4 0.32Down
Larval tubule59 14 of 4 0.50Down
Larval hindgut43 14 of 4 0.35Down
Larval fat body45 54 of 4 0.40Down
Larval trachea89 34 of 4 0.73None
Larval carcass55 34 of 4 0.45Down
S2 cells (growing)127 74 of 4 1.03None
Whole fly123 114 of 4

Looking for CG31365-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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