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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31371-RA through 18771 annotations produced 1 hits



(CG31371):

Annotation Number : CG31371
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051371
Gbrowse : chr3R:26326923-26329082 (-) // 100.0 //
Probeset : 1635243_at
Accessions : protein= NP_733375;, nucleotide= NM_170496;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation
Interpro : "0004656 // procollagen-proline 4-dioxygenase activity // inferred from electronic annotation /// 0005488 // binding //
FlyMine data for FBgn0051371.
VDRC has 2 RNAi stocks for FBgn0051371 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 3.00Up
Head1 00 of 4 0.80None
Eye2 10 of 4 1.91None
Thoracicoabdominal ganglion2 10 of 4 2.00None
Salivary gland7 20 of 4 5.20None
Crop3 10 of 4 2.20None
Midgut2 10 of 4 1.80None
Tubule3 00 of 4 2.40Up
Hindgut44 24 of 432.90Up
Heart2 10 of 4 1.96None
Fat body2 10 of 4 1.74None
Ovary2 00 of 4 2.00None
Testis1 00 of 4 1.00None
Male accessory glands18 51 of 414.00Up
Virgin spermatheca3 00 of 4 2.24None
Mated spermatheca4 20 of 4 3.46None
Adult carcass5 20 of 4 4.20None
Larval CNS1 00 of 4 0.91None
Larval Salivary gland5 10 of 4 3.83None
Larval midgut1 00 of 4 1.35None
Larval tubule3 10 of 4 2.70None
Larval hindgut1 00 of 4 1.26None
Larval fat body4 20 of 4 3.10None
Larval trachea1 20 of 4 1.39None
Larval carcass4 20 of 4 3.41None
S2 cells (growing)3 10 of 4 2.87None
Whole fly1 00 of 4

Looking for CG31371-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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