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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31410-RA through 18771 annotations produced 1 hits



CG31410 (Npc2e):

Annotation Number : CG31410
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051410
Gbrowse : chr3R:5879119-5880005 (+) // 100.0 //
Probeset : 1623732_at
Accessions : protein= NP_731439;, nucleotide= NM_169323;
FlyMine data for FBgn0051410.
VDRC has 3 RNAi stocks for FBgn0051410 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 00 of 4 0.00Down
Head4 ± 10 of 4 0.00Down
Eye7 ± 21 of 4 0.04Down
Thoracicoabdominal ganglion8 ± 00 of 4 0.00Down
Salivary gland5 ± 10 of 4 0.03Down
Crop5 ± 10 of 4 0.00Down
Midgut2477 ± 3624 of 414.40Up
Tubule7 ± 10 of 4 0.00Down
Hindgut229 ± 454 of 4 1.30None
Heart3 ± 10 of 4 0.02Down
Fat body5 ± 30 of 4 0.03Down
Ovary4 ± 00 of 4 0.00Down
Testis3 ± 10 of 4 0.00Down
Male accessory glands2 ± 00 of 4 0.00Down
Virgin spermatheca13 ± 22 of 4 0.08None
Mated spermatheca7 ± 01 of 4 0.04Down
Adult carcass10 ± 30 of 4 0.10None
Larval CNS4 ± 10 of 4 0.03Down
Larval Salivary gland12 ± 41 of 4 0.07None
Larval midgut852 ± 444 of 4 4.95Up
Larval tubule4 ± 10 of 4 0.00Down
Larval hindgut5 ± 10 of 4 0.03Down
Larval fat body9 ± 10 of 4 0.10Down
Larval trachea2 ± 10 of 4 0.01Down
Larval carcass2 ± 00 of 4 0.01Down
S2 cells (growing)2 ± 10 of 4 0.02Down
Whole fly172 ± 514 of 4

Looking for CG31410-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime