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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31412-RA through 18771 annotations produced 1 hits



CG31411 (CG34409):

Annotation Number : CG31412
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085438
Gbrowse : chr3R:5568774-5569151 (-) // 100.0 //
Probeset : 1633516_at
Accessions : protein= NP_001097728;, nucleotide= NM_001104258;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0085438.
VDRC has 3 RNAi stocks for FBgn0085438 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain22 ± 14 of 4 2.50Up
Head13 ± 10 of 4 1.40None
Eye5 ± 00 of 4 0.59Down
Thoracicoabdominal ganglion11 ± 13 of 4 1.20None
Salivary gland8 ± 20 of 4 0.91None
Crop4 ± 20 of 4 0.50None
Midgut12 ± 10 of 4 1.30None
Tubule2 ± 00 of 4 0.30Down
Hindgut4 ± 20 of 4 0.50None
Heart6 ± 00 of 4 0.75None
Fat body5 ± 40 of 4 0.65None
Ovary1 ± 00 of 4 0.10Down
Testis33 ± 24 of 4 3.60Up
Male accessory glands5 ± 10 of 4 0.60None
Virgin spermatheca2 ± 10 of 4 0.32Down
Mated spermatheca3 ± 10 of 4 0.37Down
Adult carcass6 ± 20 of 4 0.80None
Larval CNS29 ± 34 of 4 3.24Up
Larval Salivary gland2 ± 10 of 4 0.29Down
Larval midgut19 ± 20 of 4 2.16Up
Larval tubule2 ± 00 of 4 0.30Down
Larval hindgut7 ± 10 of 4 0.85None
Larval fat body11 ± 31 of 4 1.20None
Larval trachea7 ± 11 of 4 0.80None
Larval carcass12 ± 11 of 4 1.35None
S2 cells (growing)6 ± 20 of 4 0.75None
Whole fly9 ± 11 of 4

Looking for CG31412-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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