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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31423-RA through 18771 annotations produced 1 hits



CG31423 (Ir94c):

Annotation Number : CG31423
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051423
Gbrowse : chr3R:17943361-17945907 (-) // 100.0 //
Probeset : 1633933_at
Accessions : protein= NP_732701;, nucleotide= NM_169995;
FlyMine data for FBgn0051423.
VDRC has 3 RNAi stocks for FBgn0051423 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 11 of 4 4.10Up
Head1 ± 00 of 4 0.90None
Eye3 ± 10 of 4 2.55None
Thoracicoabdominal ganglion3 ± 00 of 4 2.40None
Salivary gland10 ± 10 of 4 8.37Up
Crop4 ± 10 of 4 3.60None
Midgut1 ± 00 of 4 1.10None
Tubule5 ± 10 of 4 4.50Up
Hindgut4 ± 10 of 4 3.80Up
Heart2 ± 00 of 4 1.92None
Fat body7 ± 72 of 4 6.43None
Ovary2 ± 10 of 4 1.70None
Testis2 ± 00 of 4 1.90None
Male accessory glands7 ± 10 of 4 5.90Up
Virgin spermatheca12 ± 13 of 410.43Up
Mated spermatheca20 ± 53 of 416.51Up
Adult carcass2 ± 10 of 4 1.90None
Larval CNS4 ± 10 of 4 3.67Up
Larval Salivary gland2 ± 00 of 4 1.71None
Larval midgut0 ± 00 of 4 0.29None
Larval tubule5 ± 10 of 4 4.10None
Larval hindgut1 ± 00 of 4 1.29None
Larval fat body3 ± 00 of 4 3.00Up
Larval trachea1 ± 00 of 4 0.92None
Larval carcass2 ± 00 of 4 2.18None
S2 cells (growing)1 ± 00 of 4 1.31None
Whole fly1 ± 00 of 4

Looking for CG31423-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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