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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG31424-RA through 18771 annotations produced 1 hits

CG31424 (Ir94b):

Annotation Number : CG31424
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051424
Gbrowse : chr3R:17941192-17942848 (-) // 100.0 //
Probeset : 1629976_at
Accessions : protein= NP_732700;, nucleotide= NM_169994;
FlyMine data for FBgn0051424.
VDRC has 5 RNAi stocks for FBgn0051424 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 1.50None
Head2 00 of 4 1.40None
Eye2 00 of 4 1.69None
Thoracicoabdominal ganglion2 00 of 4 1.40None
Salivary gland5 20 of 4 3.66None
Crop3 00 of 4 2.20None
Midgut1 00 of 4 0.80None
Tubule7 10 of 4 4.40Up
Hindgut6 00 of 4 4.20Up
Heart1 00 of 4 0.86None
Fat body5 51 of 4 3.25None
Ovary1 00 of 4 1.00None
Testis11 13 of 4 7.40Up
Male accessory glands8 10 of 4 5.30Up
Virgin spermatheca10 00 of 4 6.53Up
Mated spermatheca11 41 of 4 7.22None
Adult carcass8 40 of 4 5.50None
Larval CNS2 20 of 4 1.53None
Larval Salivary gland4 10 of 4 2.92None
Larval midgut2 10 of 4 1.52None
Larval tubule5 10 of 4 3.30None
Larval hindgut3 00 of 4 1.86None
Larval fat body6 10 of 4 3.80Up
Larval trachea0 00 of 4 0.52None
Larval carcass4 10 of 4 2.77None
S2 cells (growing)4 10 of 4 2.81None
Whole fly1 00 of 4

Looking for CG31424-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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