FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG3143-RA through 18771 annotations produced 1 hits

"forkhead box ( sub-group O"):

Annotation Number : CG3143
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : chr3R:9882693-9913122 (+) // 100.0 //
Probeset : 1631597_at
Accessions : protein= , nucleotide= NP_001138053; /// NP_001138054; /// NP_650330; /// NP_996204; /// NP_996205;
Pathway : "0001558 // regulation of cell growth // inferred from mutant phenotype /// 0001745 // compound eye morphogenesis // inf
Interpro : DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription
FlyMine data for full length.
Homophila reports that CG3143 is a close match (9e-11) to human gene FKHL15;FOXE1;TITF2;TTF2 (NP_004464), a gene associated with Bamforth-Lazarus syndrome, 241850 (3).
BioGrid reports that CG3143 interacts with CG9539 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	28 ± 2	4 of 4	0.30	Down
Head	84 ± 9	4 of 4	0.90	None
Eye	48 ± 4	4 of 4	0.54	Down
Thoracicoabdominal ganglion	37 ± 5	4 of 4	0.40	Down
Salivary gland	91 ± 1	4 of 4	1.00	None
Crop	115 ± 5	4 of 4	1.30	Up
Midgut	133 ± 8	4 of 4	1.50	Up
Tubule	67 ± 9	4 of 4	0.70	Down
Hindgut	163 ± 7	4 of 4	1.80	Up
Heart	123 ± 5	4 of 4	1.35	Up
Fat body	195 ± 33	4 of 4	2.14	Up
Ovary	146 ± 6	4 of 4	1.60	Up
Testis	14 ± 2	4 of 4	0.20	Down
Male accessory glands	158 ± 6	4 of 4	1.70	Up
Virgin spermatheca	69 ± 6	4 of 4	0.76	None
Mated spermatheca	53 ± 4	4 of 4	0.58	Down
Adult carcass	136 ± 9	4 of 4	1.50	Up
Larval CNS	27 ± 3	4 of 4	0.30	Down
Larval Salivary gland	63 ± 5	4 of 4	0.69	Down
Larval midgut	38 ± 3	4 of 4	0.42	Down
Larval tubule	37 ± 2	4 of 4	0.40	Down
Larval hindgut	56 ± 6	4 of 4	0.62	Down
Larval fat body	263 ± 20	4 of 4	2.90	Up
Larval trachea	38 ± 12	4 of 4	0.42	Down
Larval carcass	50 ± 3	4 of 4	0.55	Down
S2 cells (growing)	48 ± 1	4 of 4	0.53	Down
Whole fly	91 ± 7	4 of 4

Looking for CG3143-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720