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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3143-RA through 18771 annotations produced 1 hits



"forkhead box ( sub-group O"):

Annotation Number : CG3143
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : chr3R:9882693-9913122 (+) // 100.0 //
Probeset : 1631597_at
Accessions : protein= , nucleotide= NP_001138053; /// NP_001138054; /// NP_650330; /// NP_996204; /// NP_996205;
Pathway : "0001558 // regulation of cell growth // inferred from mutant phenotype /// 0001745 // compound eye morphogenesis // inf
Interpro : DNA-dependent // inferred from electronic annotation /// 0006355 // regulation of transcription
FlyMine data for full length.
Homophila reports that CG3143 is a close match (9e-11) to human gene FKHL15;FOXE1;TITF2;TTF2 (NP_004464), a gene associated with Bamforth-Lazarus syndrome, 241850 (3).
BioGrid reports that CG3143 interacts with CG9539 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain28 24 of 4 0.30Down
Head84 94 of 4 0.90None
Eye48 44 of 4 0.54Down
Thoracicoabdominal ganglion37 54 of 4 0.40Down
Salivary gland91 14 of 4 1.00None
Crop115 54 of 4 1.30Up
Midgut133 84 of 4 1.50Up
Tubule67 94 of 4 0.70Down
Hindgut163 74 of 4 1.80Up
Heart123 54 of 4 1.35Up
Fat body195 334 of 4 2.14Up
Ovary146 64 of 4 1.60Up
Testis14 24 of 4 0.20Down
Male accessory glands158 64 of 4 1.70Up
Virgin spermatheca69 64 of 4 0.76None
Mated spermatheca53 44 of 4 0.58Down
Adult carcass136 94 of 4 1.50Up
Larval CNS27 34 of 4 0.30Down
Larval Salivary gland63 54 of 4 0.69Down
Larval midgut38 34 of 4 0.42Down
Larval tubule37 24 of 4 0.40Down
Larval hindgut56 64 of 4 0.62Down
Larval fat body263 204 of 4 2.90Up
Larval trachea38 124 of 4 0.42Down
Larval carcass50 34 of 4 0.55Down
S2 cells (growing)48 14 of 4 0.53Down
Whole fly91 74 of 4

Looking for CG3143-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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