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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31464-RA through 18771 annotations produced 1 hits



(CG31464):

Annotation Number : CG31464
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051464
Gbrowse : chr3R:4116973-4117726 (+) // 100.0 //
Probeset : 1639062_at
Accessions : protein= NP_731226;, nucleotide= NM_169214;
FlyMine data for FBgn0051464.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.60None
Head2 ± 10 of 4 0.90None
Eye3 ± 00 of 4 1.38None
Thoracicoabdominal ganglion2 ± 10 of 4 1.10None
Salivary gland6 ± 20 of 4 2.72None
Crop3 ± 10 of 4 1.40None
Midgut10 ± 10 of 4 4.20Up
Tubule4 ± 00 of 4 1.60Up
Hindgut2 ± 10 of 4 1.10None
Heart0 ± 00 of 4 0.25None
Fat body5 ± 11 of 4 2.17None
Ovary1 ± 00 of 4 0.70None
Testis3 ± 00 of 4 1.30None
Male accessory glands4 ± 30 of 4 2.00None
Virgin spermatheca2 ± 00 of 4 1.12None
Mated spermatheca3 ± 11 of 4 1.49None
Adult carcass3 ± 10 of 4 1.50None
Larval CNS1 ± 00 of 4 0.75None
Larval Salivary gland3 ± 00 of 4 1.39None
Larval midgut288 ± 204 of 4115.53Up
Larval tubule4 ± 10 of 4 1.70None
Larval hindgut3 ± 10 of 4 1.39None
Larval fat body5 ± 20 of 4 2.00None
Larval trachea4 ± 20 of 4 1.84None
Larval carcass2 ± 10 of 4 1.19None
S2 cells (growing)3 ± 00 of 4 1.46None
Whole fly2 ± 10 of 4

Looking for CG31464-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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